Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PPC_RS09130 Genome accession   NZ_AP014522
Coordinates   2002954..2003589 (+) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens Cab57     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997954..2008589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPC_RS09110 (PPC_1820) - 1998203..1999135 (+) 933 WP_041116773.1 ABC transporter ATP-binding protein -
  PPC_RS09115 (PPC_1821) - 1999132..1999911 (+) 780 WP_011060097.1 ABC transporter permease -
  PPC_RS09120 (PPC_1822) - 1999965..2000480 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  PPC_RS09125 (PPC_1823) comA 2000620..2002851 (+) 2232 WP_041116775.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPC_RS09130 (PPC_1824) exbB 2002954..2003589 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPC_RS09135 (PPC_1825) - 2003586..2004014 (+) 429 WP_011060101.1 ExbD/TolR family protein -
  PPC_RS09140 (PPC_1826) lpxK 2004014..2005024 (+) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  PPC_RS09145 (PPC_1827) - 2005049..2005234 (+) 186 WP_011060103.1 Trm112 family protein -
  PPC_RS09150 (PPC_1828) kdsB 2005231..2005995 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPC_RS09155 (PPC_1829) - 2005995..2006459 (+) 465 WP_041116777.1 low molecular weight protein-tyrosine-phosphatase -
  PPC_RS09160 (PPC_1830) murB 2006456..2007475 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -
  PPC_RS09165 (PPC_1831) - 2007718..2008188 (+) 471 WP_041116779.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=65756 PPC_RS09130 WP_011060100.1 2002954..2003589(+) (exbB) [Pseudomonas protegens Cab57]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=65756 PPC_RS09130 WP_011060100.1 2002954..2003589(+) (exbB) [Pseudomonas protegens Cab57]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTCACTCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAGCTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment