Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MCP04_RS19420 Genome accession   NZ_CP092419
Coordinates   4035274..4035654 (-) Length   126 a.a.
NCBI ID   WP_017288634.1    Uniprot ID   -
Organism   Leptolyngbya boryana IU 594     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4030274..4040654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCP04_RS19405 (MCP04_19405) - 4032856..4033317 (-) 462 WP_017288631.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  MCP04_RS19410 (MCP04_19410) - 4033706..4034626 (-) 921 WP_017288632.1 lipopolysaccharide assembly protein LapB -
  MCP04_RS19415 (MCP04_19415) - 4034809..4035114 (-) 306 WP_026148689.1 hypothetical protein -
  MCP04_RS19420 (MCP04_19420) pilH 4035274..4035654 (-) 381 WP_017288634.1 PleD family two-component system response regulator Machinery gene
  MCP04_RS19425 (MCP04_19425) - 4035758..4036567 (-) 810 WP_017288635.1 hypothetical protein -
  MCP04_RS19430 (MCP04_19430) - 4036795..4038309 (+) 1515 WP_017288636.1 UbiD family decarboxylase -
  MCP04_RS19435 (MCP04_19435) - 4038598..4038999 (+) 402 WP_017288637.1 YMGG-like glycine zipper-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14101.24 Da        Isoelectric Point: 4.6436

>NTDB_id=657347 MCP04_RS19420 WP_017288634.1 4035274..4035654(-) (pilH) [Leptolyngbya boryana IU 594]
MSWVLVVDDSAVVRELISTELRHQGFDVAVANDGVDAISVIQKHPPDLVITDVVMPRMNGYELCRWIKSDPRSQNIPVMI
CSIKGEDFDRYWGMKQGADAYMIKPCPPAEMLSAIDYLLSRSATSN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=657347 MCP04_RS19420 WP_017288634.1 4035274..4035654(-) (pilH) [Leptolyngbya boryana IU 594]
ATGAGTTGGGTTTTAGTCGTGGACGATAGCGCGGTTGTGCGAGAACTCATTTCTACCGAATTGCGGCATCAAGGATTTGA
TGTTGCCGTTGCGAATGATGGTGTTGATGCCATATCCGTCATTCAAAAACATCCACCCGATCTGGTCATTACAGATGTCG
TGATGCCGCGCATGAATGGCTATGAGCTTTGCCGTTGGATCAAAAGTGATCCACGCAGCCAGAACATTCCAGTCATGATC
TGTTCGATTAAAGGTGAAGATTTCGATCGCTACTGGGGCATGAAACAAGGTGCAGATGCGTACATGATCAAACCCTGTCC
ACCTGCTGAGATGTTAAGTGCGATCGATTATTTACTGTCTCGCTCAGCCACGTCAAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

94.444

0.532
  pilG Acinetobacter baumannii strain A118

41.964

88.889

0.373
  pilL-C Synechocystis sp. PCC 6803

38.983

93.651

0.365