Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MJP36_RS14000 Genome accession   NZ_CP092411
Coordinates   3053343..3055556 (+) Length   737 a.a.
NCBI ID   WP_244385579.1    Uniprot ID   -
Organism   Pseudomonas palleroniana strain Q1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3048343..3060556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJP36_RS13985 (MJP36_13985) - 3050603..3051331 (+) 729 WP_060755628.1 response regulator transcription factor -
  MJP36_RS13990 (MJP36_13990) - 3051318..3052676 (+) 1359 WP_244385578.1 sensor histidine kinase -
  MJP36_RS13995 (MJP36_13995) - 3052680..3053195 (-) 516 WP_090370293.1 DUF2062 domain-containing protein -
  MJP36_RS14000 (MJP36_14000) comA 3053343..3055556 (+) 2214 WP_244385579.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MJP36_RS14005 (MJP36_14005) exbB 3055666..3056301 (+) 636 WP_060755624.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MJP36_RS14010 (MJP36_14010) - 3056298..3056726 (+) 429 WP_104994120.1 ExbD/TolR family protein -
  MJP36_RS14015 (MJP36_14015) lpxK 3056726..3057736 (+) 1011 WP_104994119.1 tetraacyldisaccharide 4'-kinase -
  MJP36_RS14020 (MJP36_14020) - 3057761..3057946 (+) 186 WP_003174668.1 Trm112 family protein -
  MJP36_RS14025 (MJP36_14025) kdsB 3057943..3058707 (+) 765 WP_104994118.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MJP36_RS14030 (MJP36_14030) - 3058707..3059171 (+) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  MJP36_RS14035 (MJP36_14035) murB 3059168..3060187 (+) 1020 WP_244385580.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79877.66 Da        Isoelectric Point: 10.7461

>NTDB_id=657192 MJP36_RS14000 WP_244385579.1 3053343..3055556(+) (comA) [Pseudomonas palleroniana strain Q1]
MFALALGLLTLRWLPALPPVGGVLAMLVLALMLLPWRSYPLAFFLLGLSWACISAQWALNDRLLPALDGQTRWVEGRVTG
LPQQTSSGVRFELSDSRSRHARLPKRIRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATASVKD
GQRLAPARDAWRDSLRQRLMSVDMQNRQGAVTALVLGDGSGLDAQDWRVLQDTGTVHLLVISGQHIGLLAGLIYGLVAGL
ARYGGWPHALPWLPWACGLAFAAALGYGLLAGLGVPVQRACMMVALVLLWRLRFRHLGGWWPLLLAFNAVLVFEPLASLQ
PGFWLSFAAVAVLVLAFGARLGPWSVWQAWTRPQWLIALGLFPVLLVLGLPISLSAPVANLFAVPWVSLVVLPLALMGTA
LLGVPFVGENLLWLAGGALDGLFQGLTLLAARVPAWTPAEVPLGYWLVSLVGTVVLLLPKGVPFRLLGWPMLLLAVFPPR
GPVPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGMIDSGARVVLPSLKKLGVERLDMMLLSHADADHAGGAVAVA
EGLPVGRVVGGETEGLPAVLAAQPCISGETWVWDGVSFALWQWPGALDGNPRSCVLQVQANGERLLLTGDIDRAAERAFL
DTPLATPTDWLQAPHHGSRSSSSWPFVQRLAPKSVLISRGWGNAFGHPHASVMERYRAMGSRVYDSAEQGAVRVQLGAFK
PPVVARSQRRFWREPLP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=657192 MJP36_RS14000 WP_244385579.1 3053343..3055556(+) (comA) [Pseudomonas palleroniana strain Q1]
ATGTTCGCGCTCGCACTCGGTTTGCTGACGTTGCGCTGGTTGCCGGCACTGCCGCCGGTCGGCGGGGTGTTGGCGATGCT
GGTGCTGGCCTTGATGTTATTGCCGTGGCGCAGCTATCCACTGGCGTTCTTTCTGCTGGGCCTGAGCTGGGCTTGCATCA
GCGCGCAGTGGGCGCTGAATGATCGATTGCTACCCGCGCTGGACGGGCAGACCCGCTGGGTCGAGGGCCGTGTCACCGGG
CTGCCGCAGCAGACGAGCAGCGGCGTGCGCTTCGAACTCAGCGACAGTCGGTCGCGCCATGCGCGTTTGCCCAAGCGTAT
CCGGGTGTCCTGGCACGGTGGACCGGCGGTACGCAGTGGCGAACGCTGGCGCCTGGCTGTGACGCTCAAGCGACCGTCCG
GCCTGCTCAACTTTCACGGTTTTGACTATGAGGCGTGGTTGCTGGCCCAGCGCATTGGCGCTACTGCGTCTGTCAAGGAC
GGCCAGCGCCTGGCGCCGGCTCGCGATGCGTGGCGCGATAGCCTGCGCCAGCGGCTGATGAGCGTGGACATGCAAAATCG
CCAAGGCGCCGTGACGGCGTTGGTGCTGGGGGACGGTTCCGGCTTGGATGCGCAGGATTGGCGGGTGCTGCAGGACACCG
GGACCGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCAGGGTTGATTTACGGCCTGGTGGCCGGGTTG
GCGCGCTATGGTGGCTGGCCCCATGCGCTGCCGTGGCTGCCATGGGCATGCGGTTTGGCGTTTGCCGCCGCGCTGGGTTA
TGGCCTGCTCGCTGGGTTGGGTGTGCCGGTGCAGCGGGCCTGCATGATGGTCGCCCTGGTGTTGCTGTGGCGCCTGCGGT
TCCGGCATTTGGGCGGCTGGTGGCCGTTGTTGCTGGCATTCAATGCGGTGCTGGTGTTCGAGCCCTTGGCCAGTCTGCAG
CCGGGGTTCTGGTTGTCGTTTGCCGCGGTTGCGGTGCTGGTGCTGGCTTTCGGTGCACGTCTGGGCCCCTGGAGCGTCTG
GCAGGCATGGACCCGGCCCCAATGGCTGATCGCCCTCGGGTTGTTTCCGGTGTTGCTGGTGCTCGGCCTGCCCATCAGCC
TCAGCGCGCCGGTCGCCAACCTGTTTGCCGTGCCGTGGGTCAGCCTGGTGGTTTTGCCCCTGGCGCTGATGGGCACTGCG
CTGCTAGGGGTGCCATTTGTCGGGGAGAACCTGCTGTGGCTGGCCGGTGGGGCACTGGATGGACTGTTCCAGGGTTTGAC
ACTGTTGGCTGCGCGCGTGCCCGCCTGGACACCGGCCGAAGTGCCGTTGGGATATTGGCTGGTGAGCCTTGTGGGTACCG
TGGTATTGCTGCTGCCCAAGGGCGTGCCGTTCCGGTTGCTGGGTTGGCCGATGCTTCTGTTGGCAGTGTTTCCTCCCAGG
GGCCCGGTGCCCCATGGGCAGGTTGACGTGGTGCAACTGGACGTCGGCCAGGGCCAGGCATTGATTCTGCGCACCCGTCA
TCACAGCTTGCTCTACGATGCCGGCCCTCGATCCGGGATGATTGATTCAGGGGCGCGAGTGGTCTTGCCATCGTTGAAGA
AACTCGGGGTCGAGCGGTTGGACATGATGTTGCTCAGCCATGCCGACGCCGACCATGCCGGCGGTGCGGTCGCGGTGGCC
GAGGGGCTGCCCGTCGGCCGGGTAGTGGGTGGCGAGACCGAAGGGCTGCCGGCTGTTCTCGCGGCTCAGCCCTGTATCAG
TGGCGAGACATGGGTGTGGGACGGTGTGTCGTTCGCGTTATGGCAATGGCCGGGTGCGCTCGACGGTAACCCCAGGTCAT
GTGTGTTACAGGTACAGGCCAATGGTGAGCGCCTGCTGCTCACCGGCGATATCGACCGTGCGGCAGAACGGGCTTTTCTC
GACACGCCGCTGGCGACGCCAACCGACTGGCTGCAAGCCCCCCATCATGGCAGCCGCAGTTCTTCCTCCTGGCCCTTCGT
GCAACGGTTGGCACCCAAGTCGGTGTTGATCTCCAGAGGGTGGGGCAATGCATTCGGCCACCCTCACGCGTCGGTAATGG
AACGTTATCGGGCCATGGGCAGTCGGGTCTACGACAGCGCCGAGCAGGGCGCGGTGCGTGTGCAATTGGGCGCCTTCAAG
CCACCGGTCGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAACCGTTACCTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Competence protein (Competence)

(194-459)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.558

0.583
  comA Ralstonia pseudosolanacearum GMI1000

34.65

100

0.369