Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MJP36_RS14005 Genome accession   NZ_CP092411
Coordinates   3055666..3056301 (+) Length   211 a.a.
NCBI ID   WP_060755624.1    Uniprot ID   A0A0X7K145
Organism   Pseudomonas palleroniana strain Q1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3050666..3061301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJP36_RS13990 (MJP36_13990) - 3051318..3052676 (+) 1359 WP_244385578.1 sensor histidine kinase -
  MJP36_RS13995 (MJP36_13995) - 3052680..3053195 (-) 516 WP_090370293.1 DUF2062 domain-containing protein -
  MJP36_RS14000 (MJP36_14000) comA 3053343..3055556 (+) 2214 WP_244385579.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MJP36_RS14005 (MJP36_14005) exbB 3055666..3056301 (+) 636 WP_060755624.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MJP36_RS14010 (MJP36_14010) - 3056298..3056726 (+) 429 WP_104994120.1 ExbD/TolR family protein -
  MJP36_RS14015 (MJP36_14015) lpxK 3056726..3057736 (+) 1011 WP_104994119.1 tetraacyldisaccharide 4'-kinase -
  MJP36_RS14020 (MJP36_14020) - 3057761..3057946 (+) 186 WP_003174668.1 Trm112 family protein -
  MJP36_RS14025 (MJP36_14025) kdsB 3057943..3058707 (+) 765 WP_104994118.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MJP36_RS14030 (MJP36_14030) - 3058707..3059171 (+) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  MJP36_RS14035 (MJP36_14035) murB 3059168..3060187 (+) 1020 WP_244385580.1 UDP-N-acetylmuramate dehydrogenase -
  MJP36_RS14040 (MJP36_14040) - 3060247..3060918 (-) 672 WP_060755618.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22899.03 Da        Isoelectric Point: 6.8768

>NTDB_id=657193 MJP36_RS14005 WP_060755624.1 3055666..3056301(+) (exbB) [Pseudomonas palleroniana strain Q1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=657193 MJP36_RS14005 WP_060755624.1 3055666..3056301(+) (exbB) [Pseudomonas palleroniana strain Q1]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
TGAACGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGGATAAACTCAAGGAGCTGCGCGCCAACTCGCCCCTGGGGGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGTTGGAACGCTACAT
CAACGCCCTCGGTACCATTGCCGCGATGGCGCCGTTGCTCGGCTTGCTGGGGACGGTGCTGGGTATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGTTGGCCGGTGGTATTTCCAAGGCGTTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCATCGGTGTTTTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGATGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X7K145

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858