Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MID13_RS14160 Genome accession   NZ_CP092384
Coordinates   3129334..3129966 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio gigantis strain ACE001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124334..3134966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS14140 (MID13_14140) - 3125821..3126291 (+) 471 WP_048605369.1 TIGR02444 family protein -
  MID13_RS14145 (MID13_14145) - 3126561..3127541 (+) 981 WP_239716759.1 hydrolase -
  MID13_RS14150 (MID13_14150) - 3127935..3128147 (+) 213 WP_086715756.1 YheU family protein -
  MID13_RS14155 (MID13_14155) - 3128225..3129094 (+) 870 WP_086715758.1 phosphoribulokinase -
  MID13_RS14160 (MID13_14160) crp 3129334..3129966 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  MID13_RS14165 (MID13_14165) - 3130158..3130949 (-) 792 WP_239716761.1 DUF1338 domain-containing protein -
  MID13_RS14170 (MID13_14170) astD 3131162..3132619 (-) 1458 WP_239716764.1 succinylglutamate-semialdehyde dehydrogenase -
  MID13_RS14175 (MID13_14175) astA 3132659..3133678 (-) 1020 WP_239716766.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=657101 MID13_RS14160 WP_004729651.1 3129334..3129966(+) (crp) [Vibrio gigantis strain ACE001]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=657101 MID13_RS14160 WP_004729651.1 3129334..3129966(+) (crp) [Vibrio gigantis strain ACE001]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAAATGCTTGAAGAGCAGAACTTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467