Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU34_RS19720 Genome accession   NZ_CP108235
Coordinates   4431069..4431746 (-) Length   225 a.a.
NCBI ID   WP_020129199.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4426069..4436746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS19690 (OHU34_19700) - 4426090..4427307 (-) 1218 WP_405767528.1 cytochrome P450 -
  OHU34_RS19695 (OHU34_19705) - 4427819..4427947 (+) 129 WP_308285914.1 Scr1 family TA system antitoxin-like transcriptional regulator -
  OHU34_RS19700 (OHU34_19710) - 4427950..4428126 (+) 177 WP_142265385.1 DUF397 domain-containing protein -
  OHU34_RS19705 (OHU34_19715) - 4428158..4428712 (-) 555 WP_142265384.1 hypothetical protein -
  OHU34_RS19710 (OHU34_19720) vraR 4428899..4429564 (-) 666 WP_405767532.1 response regulator Regulator
  OHU34_RS19715 (OHU34_19725) - 4429561..4430922 (-) 1362 WP_142265383.1 sensor histidine kinase -
  OHU34_RS19720 (OHU34_19730) vraR 4431069..4431746 (-) 678 WP_020129199.1 response regulator transcription factor Regulator
  OHU34_RS19725 (OHU34_19735) - 4432040..4433359 (-) 1320 Protein_3913 sensor histidine kinase -
  OHU34_RS19730 (OHU34_19740) - 4433352..4434539 (-) 1188 WP_142267973.1 acyltransferase -
  OHU34_RS19735 (OHU34_19745) - 4434640..4435572 (-) 933 WP_405767533.1 alpha/beta hydrolase -
  OHU34_RS19740 (OHU34_19750) - 4435817..4436701 (-) 885 WP_405767536.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24308.04 Da        Isoelectric Point: 5.3398

>NTDB_id=656849 OHU34_RS19720 WP_020129199.1 4431069..4431746(-) (vraR) [Streptomyces sp. NBC_00080]
MTTGGTIRVLIADDQEMVRQGFTVLLNAHPGIEVVGQAVHGLDAVAKVDELAPDVVLMDIRMPELGGIEATQRITLAHPH
IKVLVLTTFDLDEYVYDALRAGASGFLLKDASADRLAEAVRVVAAGDALLAPVITRKLIAEFSRLDGRPRAPLKERVGDL
TERETEVLTLIAQGLSNAEIADHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=656849 OHU34_RS19720 WP_020129199.1 4431069..4431746(-) (vraR) [Streptomyces sp. NBC_00080]
ATGACGACCGGCGGCACCATCCGCGTACTGATCGCCGATGACCAGGAGATGGTCCGGCAGGGCTTCACCGTGTTGCTCAA
CGCCCACCCGGGCATCGAGGTGGTCGGGCAGGCGGTGCACGGCCTGGACGCCGTCGCCAAGGTCGACGAACTCGCCCCGG
ACGTCGTCCTGATGGACATTCGCATGCCCGAGCTCGGCGGCATCGAGGCCACGCAGCGCATCACCCTCGCGCACCCGCAC
ATCAAGGTGCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTGTACGACGCGCTGCGGGCCGGGGCGTCCGGCTTCCT
GCTGAAGGACGCCTCCGCGGACCGGCTCGCCGAGGCGGTCCGGGTGGTGGCGGCCGGCGACGCCCTGCTCGCGCCCGTCA
TCACCCGCAAGCTGATCGCCGAGTTCTCCCGTCTCGACGGCAGGCCCAGGGCCCCGCTGAAGGAGCGGGTCGGCGATCTC
ACCGAGCGCGAGACGGAGGTGCTCACCCTGATCGCCCAGGGACTGTCCAACGCGGAGATCGCCGACCACCTCTTCGTGGC
CGAGCAGACCGTGAAGACGCACGTGGGCCGCATCCTGGTGAAGCTGGGGCTGCGGGACCGCACCCAGGCGGCGGTGTTCG
CGTACGAGTCGGGGCTGGTGAGACCGTCGGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

96

0.436
  degU Bacillus subtilis subsp. subtilis str. 168

42.152

99.111

0.418