Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU34_RS19710 Genome accession   NZ_CP108235
Coordinates   4428899..4429564 (-) Length   221 a.a.
NCBI ID   WP_405767532.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4423899..4434564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS19685 (OHU34_19695) - 4425855..4426106 (+) 252 WP_405767526.1 hypothetical protein -
  OHU34_RS19690 (OHU34_19700) - 4426090..4427307 (-) 1218 WP_405767528.1 cytochrome P450 -
  OHU34_RS19695 (OHU34_19705) - 4427819..4427947 (+) 129 WP_308285914.1 Scr1 family TA system antitoxin-like transcriptional regulator -
  OHU34_RS19700 (OHU34_19710) - 4427950..4428126 (+) 177 WP_142265385.1 DUF397 domain-containing protein -
  OHU34_RS19705 (OHU34_19715) - 4428158..4428712 (-) 555 WP_142265384.1 hypothetical protein -
  OHU34_RS19710 (OHU34_19720) vraR 4428899..4429564 (-) 666 WP_405767532.1 response regulator Regulator
  OHU34_RS19715 (OHU34_19725) - 4429561..4430922 (-) 1362 WP_142265383.1 sensor histidine kinase -
  OHU34_RS19720 (OHU34_19730) vraR 4431069..4431746 (-) 678 WP_020129199.1 response regulator transcription factor Regulator
  OHU34_RS19725 (OHU34_19735) - 4432040..4433359 (-) 1320 Protein_3913 sensor histidine kinase -
  OHU34_RS19730 (OHU34_19740) - 4433352..4434539 (-) 1188 WP_142267973.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23936.58 Da        Isoelectric Point: 4.5722

>NTDB_id=656848 OHU34_RS19710 WP_405767532.1 4428899..4429564(-) (vraR) [Streptomyces sp. NBC_00080]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAIDRVRELAPDVVLMDIRMPELNGIEATREIVAADDSAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLSDTPRLSSTAQAAYGDLTE
RETEVLVLIAQGLSNLEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=656848 OHU34_RS19710 WP_405767532.1 4428899..4429564(-) (vraR) [Streptomyces sp. NBC_00080]
ATGACGATCCGAGTACTGATCGCCGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGGGAGGCGATCGACCGCGTCCGCGAGCTCGCGCCCGACGTGGTCCTGA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACGCGGGAGATCGTGGCGGCGGACGACTCGGCGAAGGTCCTG
GTACTGACGACCTTCGACCTGGACGAGTACGTCTACCAGGCGCTGCGCGCGGGCGCCTCGGGCTTCCTGCTGAAGGACGC
GTCGGCCCGCCAACTGGCCGACGGGGTGCGGGTGGTGGCGGCCGGCGAGGCGCTCCTGGCCCCGTCCGTCACCCGGCGTC
TGATCACGGAGTTCTCCAAACTGTCCGACACCCCGCGACTGTCGTCGACCGCGCAGGCGGCCTACGGCGACCTGACGGAA
CGGGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAATCTGGAGATAGCCGGCCGGCTGGTGGTCGCGGAGTC
GACCATCAAGACCCACGTGAGCAGGATCCTGGTCAAGCTGGGCCTGAGAGACCGCACCCAGGCGGCGGTCTTCGCCTACG
AGGCCCGGTTGGTGACCCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.495

98.643

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

98.19

0.407