Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MIS45_RS04710 Genome accession   NZ_CP092361
Coordinates   951759..953861 (+) Length   700 a.a.
NCBI ID   WP_249451182.1    Uniprot ID   -
Organism   Wielerella bovis strain CCUG 44465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 946759..958861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS45_RS04690 (MIS45_04690) pilM 948796..949908 (+) 1113 WP_249451180.1 type IV pilus assembly protein PilM -
  MIS45_RS04695 (MIS45_04695) - 949910..950527 (+) 618 WP_249443535.1 PilN domain-containing protein -
  MIS45_RS04700 (MIS45_04700) pilO 950524..951168 (+) 645 WP_249451181.1 type 4a pilus biogenesis protein PilO -
  MIS45_RS04705 (MIS45_04705) - 951194..951721 (+) 528 WP_249443537.1 pilus assembly protein PilP -
  MIS45_RS04710 (MIS45_04710) pilQ 951759..953861 (+) 2103 WP_249451182.1 type IV pilus secretin PilQ Machinery gene
  MIS45_RS04715 (MIS45_04715) - 953914..954426 (+) 513 WP_249451183.1 shikimate kinase -
  MIS45_RS04720 (MIS45_04720) aroB 954436..955518 (+) 1083 WP_249451184.1 3-dehydroquinate synthase -
  MIS45_RS04725 (MIS45_04725) - 955548..955967 (+) 420 WP_249443540.1 ProQ/FINO family protein -
  MIS45_RS04730 (MIS45_04730) - 956085..956654 (+) 570 WP_249451185.1 peptidylprolyl isomerase -
  MIS45_RS04735 (MIS45_04735) - 956745..957254 (+) 510 WP_249443541.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 76377.52 Da        Isoelectric Point: 9.4091

>NTDB_id=656771 MIS45_RS04710 WP_249451182.1 951759..953861(+) (pilQ) [Wielerella bovis strain CCUG 44465]
MKINSIKIMSAVALGLLFQAANAGSITDINVSVLPNKQRVIKFKFDSGVVEPSGFITSAPARIALDFPATDIKVSQSQLT
FNDQLLKQIIAAQGSEHARVLLGLGKEGQYSTEIKGNEVWVYLSEAESINTAGIAAAQSVVNSAPKNSQSYQSSGITAPF
NIDFHKGANRSGVIEYSSNYSGQPQMRVQSDRLIILLKDYPLSVQDQRNLDVTDFSTPVRTINVRRIGNDAQIIIRSQGT
WEHKVSGRNGRQTIHIVPTKNISTIGLSRKNDQKFTGKNVSLDFQNVDVRTVLQILATESGMNIVASDNVTGKMTLSLKD
VPWDQALDLILDARNLDMRKVGNIINIAPRSDLLARDTEALEAQRKLDDLGPLISQSFQLKYKNVEEFRKILRISDSASV
SDRNSILSSRGSALIDPATNTLIVTDVQSVITKFNKLIEELDVPSRQVMIEARIVEAADGFSRDLGVQFGYQRSGAHTSV
GSNWSNSINNANVGYGSATSSILNPNVALPSSASTSSIGIVRAVSSGALGLELSASESENRSKTISTPRVLTQDRQEAEI
RQGYQIPYTKREDGETSIEWKAAELVLKTTPRITPDNKVILDIEIKKDEPDGTYTAITGEAGLATRYVKTQAMIEDGGTL
VVGGIYQEATSNSIRKVPLLGDIPVVGNLFKARVRKSSRNELLFFITPRIMGSETSVLRY

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=656771 MIS45_RS04710 WP_249451182.1 951759..953861(+) (pilQ) [Wielerella bovis strain CCUG 44465]
ATGAAAATAAATTCTATCAAAATAATGTCAGCAGTAGCATTAGGTTTATTATTTCAAGCTGCAAATGCGGGAAGTATTAC
TGATATTAATGTTTCGGTACTTCCAAATAAACAACGTGTAATTAAATTCAAGTTTGATAGTGGTGTGGTTGAACCTAGTG
GTTTTATTACATCAGCTCCTGCTCGTATTGCTTTGGATTTTCCTGCAACAGATATTAAAGTTTCACAATCTCAATTAACT
TTTAATGATCAACTGCTAAAACAGATTATTGCTGCACAAGGTAGTGAGCATGCTCGTGTACTGTTGGGGTTGGGTAAAGA
AGGACAATATAGTACTGAAATTAAAGGAAATGAGGTTTGGGTATATTTGAGTGAAGCTGAATCAATTAATACAGCTGGAA
TTGCTGCTGCACAATCTGTTGTAAACTCAGCTCCTAAAAATTCACAATCTTACCAATCTTCTGGAATAACAGCGCCATTT
AATATTGATTTCCATAAAGGCGCAAATAGATCAGGTGTAATTGAGTATTCATCAAATTATTCGGGTCAGCCTCAAATGAG
AGTGCAAAGTGATCGATTGATTATCTTGTTAAAAGATTATCCATTGTCGGTTCAAGATCAACGCAATTTAGATGTAACTG
ATTTTTCTACTCCTGTGCGTACTATTAATGTTCGTCGTATTGGTAATGATGCGCAGATTATTATCAGAAGTCAGGGAACA
TGGGAGCATAAAGTTTCTGGTAGAAATGGACGCCAAACAATTCATATTGTTCCAACGAAAAATATTTCTACTATTGGGTT
AAGTCGGAAGAATGATCAGAAATTTACAGGAAAGAATGTTTCATTAGATTTCCAAAATGTTGATGTTCGTACTGTGTTGC
AGATTCTAGCAACAGAGTCAGGAATGAATATTGTTGCGAGTGATAATGTAACAGGTAAAATGACATTGTCATTGAAAGAT
GTACCTTGGGATCAGGCTTTAGATTTGATTTTGGATGCACGCAATTTGGATATGCGTAAAGTTGGTAATATTATCAATAT
TGCACCACGTTCAGATTTGTTGGCTCGTGATACAGAAGCACTTGAAGCTCAAAGAAAATTGGATGATTTGGGTCCTCTGA
TTTCTCAAAGTTTTCAGTTGAAATATAAAAATGTTGAGGAATTTAGAAAAATTTTACGCATCAGTGATTCTGCATCAGTT
TCTGATAGAAATTCAATCCTTAGTTCACGTGGTAGTGCGTTGATTGATCCTGCAACAAATACATTGATCGTTACCGATGT
TCAATCTGTAATTACGAAATTTAATAAATTAATTGAAGAATTGGATGTTCCTTCTCGTCAAGTAATGATTGAAGCTCGTA
TTGTTGAAGCTGCTGATGGATTTTCGCGTGATTTAGGTGTTCAATTTGGTTATCAGCGTTCAGGAGCACATACTTCTGTA
GGCTCAAATTGGTCTAATAGTATTAATAATGCGAATGTTGGTTATGGGTCGGCTACATCAAGTATTTTAAATCCAAATGT
TGCATTACCTTCTTCTGCATCAACAAGTTCTATCGGTATTGTGCGAGCTGTGTCGTCAGGTGCATTGGGTTTGGAATTGT
CGGCATCAGAGTCGGAAAATCGCAGTAAAACGATTTCTACGCCACGCGTATTAACTCAAGATCGTCAAGAAGCGGAAATT
CGTCAAGGTTATCAGATTCCTTATACAAAAAGGGAAGATGGTGAAACTTCTATCGAATGGAAAGCTGCGGAATTGGTCTT
GAAAACAACACCTCGTATTACACCAGATAACAAAGTTATTTTGGATATTGAAATTAAAAAAGATGAACCTGATGGTACTT
ATACCGCAATCACAGGTGAAGCAGGTCTTGCAACACGTTATGTGAAAACACAAGCAATGATTGAAGATGGTGGCACATTG
GTTGTGGGTGGTATTTATCAAGAAGCAACATCTAATTCAATTCGTAAAGTACCTTTACTGGGTGATATTCCAGTTGTTGG
TAATTTATTTAAAGCGCGAGTGCGTAAAAGTTCACGCAATGAATTGCTGTTCTTCATTACACCGCGTATTATGGGTTCTG
AAACCAGCGTATTACGTTACTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(535-691)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-447)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

48.069

100

0.516
  pilQ Neisseria gonorrhoeae strain FA1090

50.492

100

0.513
  pilQ Neisseria meningitidis MC58

53.37

78.429

0.419