Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG361_RS13085 Genome accession   NZ_CP108224
Coordinates   2983105..2984145 (-) Length   346 a.a.
NCBI ID   WP_405853487.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00090     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978105..2989145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS13070 (OG361_13075) rcrP 2978629..2980362 (+) 1734 WP_405853484.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13075 (OG361_13080) rcrQ 2980362..2982287 (+) 1926 WP_405853485.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13080 (OG361_13085) - 2982338..2983096 (+) 759 WP_405853486.1 hypothetical protein -
  OG361_RS13085 (OG361_13090) rpoS 2983105..2984145 (-) 1041 WP_405853487.1 RNA polymerase sigma factor Regulator
  OG361_RS13090 (OG361_13095) dnaG 2984291..2986183 (-) 1893 WP_405853488.1 DNA primase -
  OG361_RS13095 (OG361_13100) - 2986213..2987472 (-) 1260 WP_405853489.1 NAD(P)/FAD-dependent oxidoreductase -
  OG361_RS13100 (OG361_13105) - 2987617..2988960 (-) 1344 WP_405853490.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 39178.67 Da        Isoelectric Point: 5.8266

>NTDB_id=656662 OG361_RS13085 WP_405853487.1 2983105..2984145(-) (rpoS) [Streptomyces sp. NBC_00090]
MQTRIQTPSQPVSEEPPQHPAGPAPDEEPEIPVQRRRTDLGGNGPSSDLFRQYLREIGRIPLLSAEEEVELARRVEAGLF
AEQKLANTPDLDTRLAIDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYK
FSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEEVAAQLDLAPERVGEVLRLAQEPVS
LHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRER
IRQIESKTLNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=656662 OG361_RS13085 WP_405853487.1 2983105..2984145(-) (rpoS) [Streptomyces sp. NBC_00090]
GTGCAGACCCGGATCCAGACCCCGTCCCAGCCCGTGTCCGAGGAACCGCCCCAGCACCCCGCAGGACCCGCACCCGACGA
GGAACCCGAGATCCCGGTCCAGCGCCGCCGCACCGATCTCGGCGGCAACGGCCCCTCCTCCGACCTCTTCCGCCAGTACC
TGCGCGAGATCGGCCGCATCCCGCTCCTCAGCGCCGAGGAGGAGGTGGAACTGGCCCGGCGCGTCGAGGCCGGGCTCTTC
GCCGAGCAGAAGCTCGCCAACACCCCCGACCTGGACACCCGGCTGGCGATCGACCTGGACCGGCTCGTCGTCCTCGGCCG
GATCGCCAAACGCAGGCTCATCGAGGCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGTCGGCCGCGGCCTCA
CCATGCTCGACCTCGTCCAGGAGGGAAACCTCGGCCTCATCCGGGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAG
TTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTCCC
CGTGCACGTCGTCGAACTCATCAACCGGGTCATCCGCGTCCAGCGCCGCATGCTCCAGGAGCGCGGCTACGAACCCACCG
CCGAGGAGGTCGCCGCCCAGCTCGACCTGGCGCCCGAGCGGGTCGGCGAGGTCCTCCGCCTCGCCCAGGAACCCGTCTCC
CTGCACGCCCCCGTCGGCGAGGAGGAGGACGTCGCCCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGA
GTCCGCCGCCTTCCTGCTGCTCCGCCGCCACCTGGAGGACGTGCTCTCCACCCTCGGCGAACGTGAACGGAAGGTCGTCC
AGCTCCGCTACGGCCTCGACGACGGCAGGCCCCGCACCCTGGAGGAGATAGGCCGCATCTTCGGCGTGACGCGCGAACGC
ATCCGCCAGATCGAGTCCAAGACCCTCAACAAACTCCGGGACCACGCCTACGCGGACCAGCTCAGGGGATACCTCGACTG
A

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(192-268)

Sigma-70, region 4 (Sigma70_r4)

(281-333)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(48-81)

Sigma-70 region 2 (Sigma70_r2)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.289

86.127

0.373