Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MIS44_RS00650 Genome accession   NZ_CP092357
Coordinates   117095..118297 (+) Length   400 a.a.
NCBI ID   WP_249448765.1    Uniprot ID   -
Organism   Wielerella bovis strain 10LB456     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 112095..123297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS44_RS00630 (MIS44_00630) ffh 112872..114227 (+) 1356 WP_249449651.1 signal recognition particle protein -
  MIS44_RS00635 (MIS44_00635) - 114406..115017 (-) 612 WP_249448763.1 inner membrane CreD family protein -
  MIS44_RS00640 (MIS44_00640) - 115335..116012 (+) 678 WP_249448764.1 response regulator -
  MIS44_RS00645 (MIS44_00645) - 116006..116974 (+) 969 WP_249447009.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  MIS44_RS00650 (MIS44_00650) dprA 117095..118297 (+) 1203 WP_249448765.1 DNA-processing protein DprA Machinery gene
  MIS44_RS00655 (MIS44_00655) tsf 118599..119453 (-) 855 WP_249442782.1 translation elongation factor Ts -
  MIS44_RS00660 (MIS44_00660) rpsB 119539..120267 (-) 729 WP_249448766.1 30S ribosomal protein S2 -
  MIS44_RS00665 (MIS44_00665) - 120282..120521 (+) 240 WP_249448767.1 hypothetical protein -
  MIS44_RS00670 (MIS44_00670) - 120539..121717 (+) 1179 WP_249448768.1 phosphoglycerate kinase -
  MIS44_RS00675 (MIS44_00675) radA 121815..123197 (+) 1383 WP_249448769.1 DNA repair protein RadA Machinery gene

Sequence


Protein


Download         Length: 400 a.a.        Molecular weight: 42569.46 Da        Isoelectric Point: 6.8599

>NTDB_id=656662 MIS44_RS00650 WP_249448765.1 117095..118297(+) (dprA) [Wielerella bovis strain 10LB456]
MTESERYAWLQLAFTPYVGSETFVQLLAAFGTPQAALNAPADAISQQGKHAKQAAAKWHDTTLARQATDAALTWAQQDGC
RLMLSCDDDYPALLAEGITAPPVLFLRGNTALLHQTSVGIVGSRHATPQAMRIAQDFGRALSEHNITVISGMAAGIDTAA
HIGALCGAGSTIAVWGTGIDRIYPASNQKLARDIADKGLIISEFPLETRPLAGNFPRRNRIIAAQSHAVLVVEAALESGS
LITARQATEMGRDVMAIPGSIDNPHSKGCHKLIKEGAKLVECLDDILSELGHILPDKAYPQFSGSLKTSVKAHTKHNLPT
KISTNPVMINNASFQAASTPITTIDTAHSLLQQMGYGPVHPDTLAANSSLSASDIYALLTEWELEGIVASLAGGRYQRIK

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=656662 MIS44_RS00650 WP_249448765.1 117095..118297(+) (dprA) [Wielerella bovis strain 10LB456]
ATGACCGAATCCGAACGCTACGCATGGTTACAACTGGCTTTCACGCCCTATGTTGGCTCAGAAACTTTTGTACAGTTGCT
GGCAGCATTTGGTACACCGCAAGCGGCTTTGAATGCGCCAGCCGATGCCATCTCGCAGCAAGGCAAACACGCCAAACAAG
CAGCAGCAAAATGGCACGACACCACATTAGCACGACAAGCAACTGATGCCGCGCTGACTTGGGCACAACAAGATGGCTGC
CGTTTGATGCTGTCTTGCGATGACGATTATCCTGCGCTATTGGCAGAAGGCATCACTGCGCCACCCGTATTATTTTTGCG
TGGCAATACGGCATTGTTACATCAAACATCGGTTGGCATAGTCGGTAGTCGCCACGCGACACCACAAGCCATGCGGATTG
CCCAAGATTTTGGTAGGGCATTGAGTGAACATAATATTACGGTCATTTCAGGCATGGCAGCAGGCATTGATACCGCCGCG
CATATTGGCGCATTATGTGGCGCAGGCAGCACGATTGCCGTATGGGGAACAGGCATTGACCGCATTTATCCCGCATCCAA
CCAAAAATTGGCACGCGATATTGCCGACAAAGGCTTGATTATTTCCGAATTTCCCTTGGAGACCCGTCCATTGGCAGGCA
ATTTTCCGCGCCGCAACCGCATCATCGCCGCGCAAAGCCACGCCGTTTTGGTGGTGGAAGCCGCATTGGAAAGTGGTTCG
TTGATTACTGCCAGACAAGCCACCGAAATGGGGCGCGATGTGATGGCAATACCTGGTTCCATAGACAATCCGCACAGCAA
AGGCTGCCACAAACTCATCAAAGAAGGGGCAAAATTAGTAGAATGTTTGGACGATATTTTGAGTGAATTGGGACATATTT
TGCCTGATAAGGCTTATCCACAATTTTCAGGCAGCCTGAAAACATCTGTTAAAGCACATACCAAACACAATTTACCCACA
AAAATATCCACAAATCCTGTGATGATAAATAATGCCAGTTTTCAGGCTGCCTCTACGCCCATTACAACAATAGATACGGC
TCATTCCTTGTTGCAACAAATGGGCTACGGCCCTGTTCATCCCGATACTTTGGCAGCAAATAGCTCATTATCTGCCAGCG
ATATTTATGCCTTGCTGACAGAATGGGAATTGGAAGGAATTGTGGCAAGTTTAGCAGGTGGACGCTATCAACGGATTAAA
TAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.809

100

0.593

  dprA Neisseria meningitidis MC58

58.809

100

0.593

  dprA Neisseria gonorrhoeae strain FA1090

58.128

100

0.59

  dprA Neisseria gonorrhoeae MS11

58.128

100

0.59

  dprA Vibrio cholerae strain A1552

36.816

100

0.37