Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG361_RS13070 Genome accession   NZ_CP108224
Coordinates   2978629..2980362 (+) Length   577 a.a.
NCBI ID   WP_405853484.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00090     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973629..2985362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS13025 (OG361_13030) - 2973786..2974325 (+) 540 WP_405862225.1 peptidoglycan recognition protein -
  OG361_RS13030 (OG361_13035) - 2974406..2974987 (-) 582 WP_405853479.1 L,D-transpeptidase family protein -
  OG361_RS13035 (OG361_13040) - 2975154..2975600 (+) 447 WP_405853480.1 hypothetical protein -
  OG361_RS13040 - 2975723..2976001 (-) 279 WP_405853481.1 transposase family protein -
  OG361_RS13060 (OG361_13065) - 2976747..2977058 (+) 312 WP_405853482.1 YtxH domain-containing protein -
  OG361_RS13065 (OG361_13070) - 2977089..2978528 (+) 1440 WP_405853483.1 FGGY family carbohydrate kinase -
  OG361_RS13070 (OG361_13075) rcrP 2978629..2980362 (+) 1734 WP_405853484.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13075 (OG361_13080) rcrQ 2980362..2982287 (+) 1926 WP_405853485.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13080 (OG361_13085) - 2982338..2983096 (+) 759 WP_405853486.1 hypothetical protein -
  OG361_RS13085 (OG361_13090) rpoS 2983105..2984145 (-) 1041 WP_405853487.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63054.28 Da        Isoelectric Point: 6.2028

>NTDB_id=656660 OG361_RS13070 WP_405853484.1 2978629..2980362(+) (rcrP) [Streptomyces sp. NBC_00090]
MLIRLLRTHLRPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVDGDSGYILRFGALMVGVSVVQVVCNIGAVYYGA
RTASALGRDVRGAIFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPILGVSVTLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDGYEEERFRRANADLTDVSMATGRLMAL
MFPIVMTVVNVSGVAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PAEPVTTLDRRGHLEVRSADFRYPGAEESVLKDVGLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
RLDPALMARTVSLVPQKPYLFSGTVATNLRYGKPDASDEELWHALEVAQAADFVRELEKGLHAPIAQGGTNVSGGQRQRL
AIARTLVQKPEIYLFDDSFSALDYETDALLREALRRETADSTVVIVAQRVSTIREADRIVVLDEGRVVGTGRHQELMAEN
KTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656660 OG361_RS13070 WP_405853484.1 2978629..2980362(+) (rcrP) [Streptomyces sp. NBC_00090]
GTGCTCATAAGACTCCTCCGCACCCATCTGCGGCCCTACCGAAAGCCCATCGCGCTGCTCGTCCTGCTGCAGTTCCTGCA
GACCTGCGCAAGCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTCGACGGGGACAGCGGCTACA
TCCTGCGGTTCGGGGCGCTGATGGTCGGCGTCTCCGTCGTGCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGCGCC
CGGACGGCCTCCGCGCTGGGCCGGGACGTGCGCGGCGCGATCTTCGACCGGGTGCAGTCCTTCTCCGCGCGGGAGCTCGG
ACACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTCTCCGCGCCGATCATGTGTGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCCGTG
CTGCTCGCGGTGGTGCCGATCCTCGGCGTCTCCGTCACGCTCATCGTCCGGAGGATGCGGCCGCTCTTCCGGACCATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGTGCGTTCGTGAAGGACG
GGTACGAGGAGGAGCGGTTCCGCCGGGCCAACGCCGATCTGACCGACGTGTCGATGGCGACGGGCCGACTGATGGCACTG
ATGTTCCCGATCGTGATGACCGTCGTGAACGTCTCCGGCGTGGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGTGCGCTGACCGCCTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGCGACCGAGTCCAGCGTCGTGCCG
CCGGCCGAGCCGGTGACCACGCTCGACCGGCGCGGACATCTGGAGGTCAGGAGCGCGGACTTCCGGTACCCGGGCGCGGA
GGAGTCGGTCCTCAAGGACGTCGGCCTGGTGGCCCGGCCCGGTGAGACCACCGCGATCATCGGTTCCACGGGCAGCGGCA
AGTCGACCCTCCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGGCGGCGAGGTCCTCGTCGACGGTGTCGACGTGCGG
AGGCTCGACCCCGCGCTGATGGCCAGGACCGTGAGCCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTGGCGAC
GAACCTGCGGTACGGGAAGCCGGACGCGAGCGATGAGGAGCTCTGGCACGCGCTGGAGGTCGCCCAGGCCGCCGACTTCG
TCCGCGAGCTCGAGAAGGGGCTGCACGCCCCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGAAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGAGACCGA
CGCGCTGCTGCGCGAGGCGCTCCGGCGGGAGACGGCCGACTCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGAGGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCAGGAGCTGATGGCGGAGAAC
AAGACGTACCGGGAGATAGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.747

97.4

0.397