Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG361_RS13075 Genome accession   NZ_CP108224
Coordinates   2980362..2982287 (+) Length   641 a.a.
NCBI ID   WP_405853485.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00090     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2975362..2987287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS13040 - 2975723..2976001 (-) 279 WP_405853481.1 transposase family protein -
  OG361_RS13060 (OG361_13065) - 2976747..2977058 (+) 312 WP_405853482.1 YtxH domain-containing protein -
  OG361_RS13065 (OG361_13070) - 2977089..2978528 (+) 1440 WP_405853483.1 FGGY family carbohydrate kinase -
  OG361_RS13070 (OG361_13075) rcrP 2978629..2980362 (+) 1734 WP_405853484.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13075 (OG361_13080) rcrQ 2980362..2982287 (+) 1926 WP_405853485.1 ABC transporter ATP-binding protein Regulator
  OG361_RS13080 (OG361_13085) - 2982338..2983096 (+) 759 WP_405853486.1 hypothetical protein -
  OG361_RS13085 (OG361_13090) rpoS 2983105..2984145 (-) 1041 WP_405853487.1 RNA polymerase sigma factor Regulator
  OG361_RS13090 (OG361_13095) dnaG 2984291..2986183 (-) 1893 WP_405853488.1 DNA primase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69127.42 Da        Isoelectric Point: 5.0505

>NTDB_id=656661 OG361_RS13075 WP_405853485.1 2980362..2982287(+) (rcrQ) [Streptomyces sp. NBC_00090]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLRQLAPERGALWLMLIAGVLSVAASVVGPMILGKATDLVFAGVVGREFEGGT
KAEAIAGLRATGDSGMADMLSGVDFTPGQGIDFGAVGEVLLWVLTVYVAAGLLMLVSTRMSIKVINRTVFRMREDVQTKL
ARLPLSYFDRAKRGEVLSRATNDIDNISQTLQQSMGQLVNSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKR
SQPHFVQQWKSTGTLNAHIEEMYTGHNLVKVFGRQEESAKDFREQNDALYEAGFKAQFNSGVMQPVMFFVSNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPRRERPADLKGKVALEE
VSFRYEPDKPLVENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAQMSREELRSGIGMVLQDTW
LFGGTIADNIAYGATREVTRAEIEEAARAAHADRFVRTLPEGYDTVIDDDGAGVSTGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLASAGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=656661 OG361_RS13075 WP_405853485.1 2980362..2982287(+) (rcrQ) [Streptomyces sp. NBC_00090]
ATGGCCGGTCCTGGTGGACGCATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTGCTGCGGCAGCTGGCGCCCGAGCGCGGCGCGCTCTGGCTGATGCTGATCGCCGGCGTGCTGTCGGTGGCGGCCTCCG
TGGTCGGGCCGATGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCGTGGTCGGACGGGAGTTCGAGGGCGGCACG
AAGGCGGAGGCGATCGCGGGGCTCCGCGCGACGGGCGACTCCGGCATGGCGGACATGCTCTCCGGGGTCGATTTCACCCC
GGGGCAGGGCATCGACTTCGGCGCGGTCGGCGAGGTCCTGCTCTGGGTCCTCACGGTCTACGTGGCGGCGGGCCTGCTGA
TGCTGGTCTCCACCCGCATGTCGATCAAGGTGATCAACCGGACGGTCTTCCGGATGCGGGAGGACGTCCAGACGAAGCTG
GCGCGGCTGCCGCTGTCGTACTTCGACAGGGCGAAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAACAT
CTCGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTCACGATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGGTCTCGGTCTTCGTCGCGGCGAAGATCGGGAAGCGC
TCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCGACGGGCACGCTCAACGCGCACATCGAGGAGATGTACACCGGGCACAA
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGAAGGACTTCCGCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCCCAGTTCAACAGCGGTGTGATGCAGCCGGTGATGTTCTTCGTCTCTAACATCAACTACGTCCTGGTGGCCGTG
GTCGGCGGTCTGCGGGTGGCGAGCGGCACGCTCTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
CATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAGCTCC
TCGACGCCGAGGAGCAGGAGCCGGACGCCCCGAGGAGGGAGCGGCCCGCCGACCTCAAGGGCAAGGTCGCCCTGGAGGAG
GTCTCCTTCCGGTACGAGCCCGACAAGCCGCTCGTCGAGAACCTCTCGCTCACCGTGGAGCCCGGCCAGACGGTCGCGAT
CGTCGGCCCGACGGGCGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCA
CCCTGGACGGGGTCGACATCGCGCAGATGTCCCGGGAGGAGCTGCGGAGCGGGATCGGCATGGTCCTCCAGGACACCTGG
CTCTTCGGCGGCACCATCGCCGACAACATCGCCTACGGCGCGACGCGCGAGGTGACCCGGGCGGAGATCGAGGAGGCGGC
GCGCGCCGCGCACGCCGACCGCTTCGTCCGCACACTCCCCGAGGGGTACGACACGGTCATCGACGACGACGGGGCGGGGG
TGAGCACGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGACGAGGCC
ACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGCACCTCGTTCGT
CATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGATCGATCGTCGAACAGGGCA
CGCACGAGGAGCTGTTGGCATCGGCCGGGGCCTACGCCCGGTTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAAGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(39-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.194

96.256

0.387