NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	MIA32_RS02125	Genome accession	NZ_CP092356
Coordinates	467725..468597 (-)	Length	290 a.a.
NCBI ID	WP_016352170.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain CCL1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 462725..473597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIA32_RS02100 (MIA32_02100)	-	464460..465644 (+)	1185	WP_016352174.1	tetratricopeptide repeat protein	-
MIA32_RS02105 (MIA32_02105)	mutT	465653..466066 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
MIA32_RS02110 (MIA32_02110)	yacG	466127..466321 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
MIA32_RS02115 (MIA32_02115)	zapD	466331..467053 (-)	723	WP_016352172.1	cell division protein ZapD	-
MIA32_RS02120 (MIA32_02120)	coaE	467091..467705 (-)	615	WP_016352171.1	dephospho-CoA kinase	-
MIA32_RS02125 (MIA32_02125)	pilD	467725..468597 (-)	873	WP_016352170.1	A24 family peptidase	Machinery gene
MIA32_RS02130 (MIA32_02130)	pilC	468620..469861 (-)	1242	WP_016352169.1	type II secretion system F family protein	Machinery gene
MIA32_RS02135 (MIA32_02135)	pilB	469977..471683 (-)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MIA32_RS02140 (MIA32_02140)	tapA	471690..472112 (-)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
MIA32_RS02145 (MIA32_02145)	nadC	472435..473292 (-)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32464.76 Da Isoelectric Point: 6.7410

                                >NTDB_id=656637 MIA32_RS02125 WP_016352170.1 467725..468597(-) (pilD) [Aeromonas hydrophila strain CCL1]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVTATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=656637 MIA32_RS02125 WP_016352170.1 467725..468597(-) (pilD) [Aeromonas hydrophila strain CCL1]

ATGTTGCTGATCACTGACGTTTTTCACAGCTTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCA

ATTACGGCCATAGAGAACATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC

GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCACCGCAACATTCGCACCGGGCTGGGGCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG

CTGACCCTGCCATTGCTATGGGGCGGTCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG

TGCGATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG

GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.035	98.276	0.531
pilD	Acinetobacter nosocomialis M2	54.035	98.276	0.531
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448

Detailed information NTG0656637