Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG361_RS01205 Genome accession   NZ_CP108224
Coordinates   249739..250755 (+) Length   338 a.a.
NCBI ID   WP_405851385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00090     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 244739..255755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS01190 (OG361_01220) - 246022..247770 (+) 1749 WP_405851382.1 ABC transporter substrate-binding protein -
  OG361_RS01195 (OG361_01225) - 247785..248756 (+) 972 WP_405851383.1 ABC transporter permease -
  OG361_RS01200 (OG361_01230) - 248753..249739 (+) 987 WP_405851384.1 ABC transporter permease -
  OG361_RS01205 (OG361_01235) amiE 249739..250755 (+) 1017 WP_405851385.1 ABC transporter ATP-binding protein Regulator
  OG361_RS01210 (OG361_01240) - 250752..251774 (+) 1023 WP_405851386.1 ABC transporter ATP-binding protein -
  OG361_RS01215 (OG361_01245) - 251827..252762 (-) 936 WP_405851387.1 ornithine cyclodeaminase family protein -
  OG361_RS01220 (OG361_01250) - 252759..253883 (-) 1125 WP_405851388.1 proline racemase family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 35941.00 Da        Isoelectric Point: 6.2281

>NTDB_id=656638 OG361_RS01205 WP_405851385.1 249739..250755(+) (amiE) [Streptomyces sp. NBC_00090]
MAVSTPGPASLLSVRDLTVTFPTKRGPVRAVDSLAFDVLPGRTLGIVGESGSGKSVTSLAVMGLHTGAEVTGSVTLDGRE
LIGLSDRELNGLRGRRMAMIFQDPLSSLHPYYTVGEQIAEHHRVHFGSRRSAARERAVEALGEVGIPEPRRRAGEYPHQF
SGGMRQRVMIAMALSCEPDLLIADEPTTALDVTVQAQILELIARIQQERGLAVVMITHDLGVVARVAHDVLVMYGGRAAE
HATVDALFASPAHPYTRGLLDSLPRLDDEDDAPLRAIPGSPPSLLEPAPGCAFAPRCPRAAAGSEEERARCAGERPLLIG
PEGHPAACHFPAYEGVAS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=656638 OG361_RS01205 WP_405851385.1 249739..250755(+) (amiE) [Streptomyces sp. NBC_00090]
ATGGCCGTCTCCACCCCAGGCCCCGCCTCCCTGCTTTCGGTACGCGACCTCACGGTCACCTTCCCGACGAAGCGCGGCCC
CGTCCGGGCCGTCGACTCCCTCGCCTTCGACGTGCTGCCCGGCCGGACCCTCGGCATCGTCGGCGAGTCCGGCTCCGGCA
AGTCCGTGACCTCGCTCGCCGTCATGGGCCTGCACACCGGCGCCGAGGTCACCGGCTCCGTCACCCTCGACGGACGCGAG
CTGATCGGCCTCTCCGACCGCGAGCTCAACGGGCTGCGCGGCCGGCGGATGGCCATGATCTTCCAGGACCCGCTCTCCAG
CCTGCACCCCTACTACACCGTCGGGGAGCAGATCGCCGAGCACCACCGGGTCCACTTCGGCTCCCGCCGCTCGGCCGCCC
GCGAACGGGCCGTCGAGGCCCTCGGCGAGGTCGGCATCCCCGAACCGCGCCGCCGGGCCGGCGAGTACCCCCACCAGTTC
TCCGGCGGCATGCGCCAGCGGGTGATGATCGCGATGGCGCTGTCCTGCGAACCCGACCTCCTCATCGCCGACGAACCCAC
CACCGCGCTCGACGTCACCGTCCAGGCCCAGATCCTGGAGCTGATCGCCCGGATCCAGCAGGAGCGCGGACTCGCCGTCG
TCATGATCACGCACGATCTGGGCGTGGTCGCCCGGGTGGCCCACGACGTCCTGGTCATGTACGGCGGGCGGGCCGCCGAA
CACGCCACGGTGGACGCCCTCTTCGCGTCCCCGGCCCACCCCTACACCCGGGGCCTGCTGGACTCGCTGCCCCGGCTCGA
CGACGAGGACGACGCCCCGCTGCGCGCGATACCGGGCAGCCCGCCGTCCCTGCTCGAACCGGCACCGGGCTGCGCCTTCG
CACCCCGCTGCCCCCGCGCGGCCGCCGGCTCCGAGGAGGAGCGGGCGCGCTGCGCGGGCGAACGCCCGCTGCTCATCGGC
CCGGAGGGGCACCCGGCCGCCTGCCACTTCCCCGCGTACGAAGGCGTCGCCTCATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-301)

ABC transporter (ABC_tran)

(32-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.429

91.124

0.423
  amiE Streptococcus thermophilus LMG 18311

46.104

91.124

0.42
  amiE Streptococcus thermophilus LMD-9

46.104

91.124

0.42
  oppD Streptococcus mutans UA159

47.945

86.391

0.414