Detailed information NTG0656638

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: MIA32_RS02130
• Genome accession: NZ_CP092356
• Coordinates: 468620..469861 (-)
• Length: 413 a.a.
• NCBI ID: WP_016352169.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain CCL1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 463620..474861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIA32_RS02100 (MIA32_02100)	-	464460..465644 (+)	1185	WP_016352174.1	tetratricopeptide repeat protein	-
MIA32_RS02105 (MIA32_02105)	mutT	465653..466066 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
MIA32_RS02110 (MIA32_02110)	yacG	466127..466321 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
MIA32_RS02115 (MIA32_02115)	zapD	466331..467053 (-)	723	WP_016352172.1	cell division protein ZapD	-
MIA32_RS02120 (MIA32_02120)	coaE	467091..467705 (-)	615	WP_016352171.1	dephospho-CoA kinase	-
MIA32_RS02125 (MIA32_02125)	pilD	467725..468597 (-)	873	WP_016352170.1	A24 family peptidase	Machinery gene
MIA32_RS02130 (MIA32_02130)	pilC	468620..469861 (-)	1242	WP_016352169.1	type II secretion system F family protein	Machinery gene
MIA32_RS02135 (MIA32_02135)	pilB	469977..471683 (-)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MIA32_RS02140 (MIA32_02140)	tapA	471690..472112 (-)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
MIA32_RS02145 (MIA32_02145)	nadC	472435..473292 (-)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MIA32_RS02150 (MIA32_02150)	-	473298..473768 (-)	471	WP_024944772.1	TIGR02281 family clan AA aspartic protease	-
MIA32_RS02155 (MIA32_02155)	ampD	473916..474488 (+)	573	WP_016352163.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45426.54 Da
• Isoelectric Point: 9.8734

>NTDB_id=656638 MIA32_RS02130 WP_016352169.1 468620..469861(-) (pilC) [Aeromonas hydrophila strain CCL1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=656638 MIA32_RS02130 WP_016352169.1 468620..469861(-) (pilC) [Aeromonas hydrophila strain CCL1]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAGGCACTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAGTCCGGCGCTCTGGAGACCATCTACGACCGCATC
GCCACCTATCGCGAAAAGTCCGAAGCCCTCAAATCCAAAATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCTTTTACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTTCTCTATGTGCGCGCCTGGCGCGCCTCACAGAAAGTCAGAGACAACACCGACAAGTTCATACTAACCAT
CCCCGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTCTCCACTACCTTCTCCGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCAGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGAGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCT
ATGTATCTACCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.576	95.884	0.552
pilC	Acinetobacter baumannii D1279779	54.25	96.852	0.525
pilC	Legionella pneumophila strain ERS1305867	51.605	98.063	0.506
pilC	Acinetobacter baylyi ADP1	52.393	96.126	0.504
pilC	Vibrio cholerae strain A1552	47.99	96.368	0.462
pilC	Vibrio campbellii strain DS40M4	47.355	96.126	0.455
pilG	Neisseria meningitidis 44/76-A	40.494	98.063	0.397
pilG	Neisseria gonorrhoeae MS11	40.494	98.063	0.397
pilC	Thermus thermophilus HB27	38	96.852	0.368