Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MF271_RS15625 Genome accession   NZ_CP092190
Coordinates   2558384..2559604 (-) Length   406 a.a.
NCBI ID   WP_239049595.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2553384..2564604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS15585 (MF271_15585) - 2553447..2554274 (+) 828 WP_239049589.1 transglutaminase family protein -
  MF271_RS15590 (MF271_15590) - 2554428..2554616 (+) 189 WP_239049590.1 hypothetical protein -
  MF271_RS15595 (MF271_15595) - 2554670..2554942 (-) 273 WP_189090344.1 glutaredoxin domain-containing protein -
  MF271_RS15600 (MF271_15600) infC 2555109..2555744 (-) 636 WP_239049591.1 translation initiation factor IF-3 -
  MF271_RS15605 (MF271_15605) - 2555883..2556503 (-) 621 WP_239049592.1 LON peptidase substrate-binding domain-containing protein -
  MF271_RS15610 (MF271_15610) trmD 2556640..2557464 (-) 825 WP_239051122.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MF271_RS15615 (MF271_15615) rimM 2557467..2558048 (-) 582 WP_239049593.1 ribosome maturation factor RimM -
  MF271_RS15620 (MF271_15620) - 2558052..2558294 (-) 243 WP_239049594.1 KH domain-containing protein -
  MF271_RS15625 (MF271_15625) pilC 2558384..2559604 (-) 1221 WP_239049595.1 type II secretion system F family protein Machinery gene
  MF271_RS15630 (MF271_15630) - 2559680..2560258 (+) 579 WP_239049596.1 L-threonylcarbamoyladenylate synthase -
  MF271_RS15635 (MF271_15635) scpB 2560356..2560895 (+) 540 WP_239051123.1 SMC-Scp complex subunit ScpB -
  MF271_RS15640 (MF271_15640) - 2561157..2561918 (+) 762 WP_239049597.1 DUF4388 domain-containing protein -
  MF271_RS15645 (MF271_15645) gatA 2562073..2563560 (+) 1488 WP_370657331.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44103.88 Da        Isoelectric Point: 9.9477

>NTDB_id=656305 MF271_RS15625 WP_239049595.1 2558384..2559604(-) (pilC) [Deinococcus sp. KNUC1210]
MAVFEYRARDRGGKILSAQLEADSLAQVRDNLRSKGLMIMEIKAAKSGLNADVKIPFLSDRPPGLKQVALFSKQMATLIN
AGVPLVQSLAIMQRQIENRAFQNVLKAVRADVESGTPFSEAIAKHRKVFNRLYINLIRAGETSGTLDSIMERISDFQEKE
LALHGKIRGALTYPVIVLVFAVGVTYFLLTTIVPQFGSILTGLGAPLPALTQGLIAVSDFLQHRTLVLVAIVAVLVFVYR
RYYATTKGRYQIDTIKLRVPVLGTLLRRSAIASFARTFGLLLSSGVNIIESLEITKGTANNAVVEEALENARNVVMVGDQ
MSGSMASNKLFPPMVVSMVSIGEETGALDNMLGKVADFYEREVDEAVNGLTAAIEPIMIVFLGVIVGLIVAGMFLPMFAI
IGQLSK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=656305 MF271_RS15625 WP_239049595.1 2558384..2559604(-) (pilC) [Deinococcus sp. KNUC1210]
ATGGCTGTCTTTGAATATCGTGCGCGTGACCGGGGCGGCAAGATTCTCAGCGCTCAGCTCGAGGCTGACAGCCTGGCCCA
GGTACGCGACAACCTGCGTTCCAAGGGCTTGATGATCATGGAGATCAAGGCTGCCAAGAGTGGCCTGAACGCCGATGTCA
AGATTCCCTTCCTGTCGGATCGCCCGCCGGGCCTGAAGCAGGTGGCGCTGTTTTCCAAGCAGATGGCCACGCTGATCAAT
GCAGGTGTGCCGCTGGTGCAGTCGCTCGCCATCATGCAGCGGCAGATCGAAAACCGGGCCTTCCAGAATGTCCTCAAGGC
AGTCCGGGCCGACGTCGAGTCGGGAACGCCCTTTTCCGAAGCCATCGCCAAGCACCGCAAGGTCTTTAACCGACTGTATA
TCAACCTGATCCGGGCCGGTGAAACCTCCGGTACGCTCGACTCGATCATGGAGCGCATCAGCGACTTCCAGGAAAAGGAA
CTGGCGCTGCACGGCAAGATTCGCGGCGCACTGACGTATCCGGTGATCGTGCTGGTCTTTGCCGTGGGCGTGACGTACTT
CCTGCTGACCACTATTGTTCCTCAGTTCGGCAGCATCCTGACAGGACTGGGCGCACCGCTTCCCGCTCTCACCCAGGGCC
TGATTGCCGTCTCGGATTTCCTACAGCACAGGACGCTGGTGCTTGTCGCCATCGTCGCCGTCCTTGTCTTCGTGTACCGC
CGCTACTACGCCACCACGAAGGGCCGGTATCAGATCGACACGATCAAACTGCGCGTGCCGGTTCTCGGAACCCTGCTGCG
GCGCAGCGCTATCGCCTCGTTTGCCCGTACCTTCGGTCTGCTGCTCTCCAGCGGCGTCAACATCATCGAAAGTCTGGAAA
TTACCAAGGGAACGGCCAACAACGCGGTCGTCGAAGAAGCGCTCGAAAATGCCCGCAACGTCGTGATGGTCGGTGATCAG
ATGAGCGGCTCGATGGCGAGCAACAAGCTCTTCCCGCCGATGGTGGTTTCGATGGTGTCGATCGGCGAGGAAACGGGCGC
ACTCGACAACATGCTCGGCAAGGTCGCCGACTTCTACGAGCGCGAAGTCGATGAAGCCGTGAACGGTCTGACCGCTGCCA
TCGAGCCGATCATGATCGTCTTCCTGGGCGTCATCGTGGGTCTGATCGTGGCAGGTATGTTCCTGCCGATGTTCGCCATC
ATCGGCCAGTTGAGCAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

61.084

100

0.611
  pilC Acinetobacter baylyi ADP1

37.25

98.522

0.367
  pilC Pseudomonas stutzeri DSM 10701

37.093

98.276

0.365