Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MF598_RS02620 Genome accession   NZ_CP092185
Coordinates   516013..517398 (+) Length   461 a.a.
NCBI ID   WP_224223856.1    Uniprot ID   -
Organism   Bacillus velezensis strain K203     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511013..522398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF598_RS02600 (MF598_02600) - 512159..512806 (-) 648 WP_007614107.1 YigZ family protein -
  MF598_RS02605 (MF598_02605) degS 513029..514192 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MF598_RS02610 (MF598_02610) degU 514269..514958 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MF598_RS02615 (MF598_02615) - 515056..515904 (+) 849 WP_045209019.1 DegV family protein -
  MF598_RS02620 (MF598_02620) comFA 516013..517398 (+) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  MF598_RS02625 (MF598_02625) - 517456..517740 (+) 285 WP_003151389.1 competence protein ComFB -
  MF598_RS02630 (MF598_02630) comFC 517746..518435 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  MF598_RS02635 (MF598_02635) - 518509..518928 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MF598_RS02640 (MF598_02640) flgM 518998..519264 (+) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  MF598_RS02645 (MF598_02645) - 519279..519761 (+) 483 WP_224223854.1 flagellar protein FlgN -
  MF598_RS02650 (MF598_02650) flgK 519777..521294 (+) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  MF598_RS02655 (MF598_02655) flgL 521306..522223 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52314.66 Da        Isoelectric Point: 10.1065

>NTDB_id=656229 MF598_RS02620 WP_224223856.1 516013..517398(+) (comFA) [Bacillus velezensis strain K203]
MSEGASEFSEVRSFFYGRHLLRSEIPFSDQRINVFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFGAPSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRQPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=656229 MF598_RS02620 WP_224223856.1 516013..517398(+) (comFA) [Bacillus velezensis strain K203]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGAGTTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGTTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTGGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTTTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGTTATCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGCAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625