Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MF598_RS02610 Genome accession   NZ_CP092185
Coordinates   514269..514958 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain K203     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 509269..519958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF598_RS02590 (MF598_02590) - 509759..510835 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  MF598_RS02595 (MF598_02595) - 510934..512154 (-) 1221 WP_105937243.1 LCP family protein -
  MF598_RS02600 (MF598_02600) - 512159..512806 (-) 648 WP_007614107.1 YigZ family protein -
  MF598_RS02605 (MF598_02605) degS 513029..514192 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MF598_RS02610 (MF598_02610) degU 514269..514958 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MF598_RS02615 (MF598_02615) - 515056..515904 (+) 849 WP_045209019.1 DegV family protein -
  MF598_RS02620 (MF598_02620) comFA 516013..517398 (+) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  MF598_RS02625 (MF598_02625) - 517456..517740 (+) 285 WP_003151389.1 competence protein ComFB -
  MF598_RS02630 (MF598_02630) comFC 517746..518435 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  MF598_RS02635 (MF598_02635) - 518509..518928 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MF598_RS02640 (MF598_02640) flgM 518998..519264 (+) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  MF598_RS02645 (MF598_02645) - 519279..519761 (+) 483 WP_224223854.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=656228 MF598_RS02610 WP_003219701.1 514269..514958(+) (degU) [Bacillus velezensis strain K203]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=656228 MF598_RS02610 WP_003219701.1 514269..514958(+) (degU) [Bacillus velezensis strain K203]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGCAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1