Detailed information NTG0656162

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MF133_RS10110
• Genome accession: NZ_CP092181
• Coordinates: 2231351..2232226 (+)
• Length: 291 a.a.
• NCBI ID: WP_239054131.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain 211703
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2226351..2237226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MF133_RS10090 (MF133_10090)	nadC	2226586..2227449 (+)	864	WP_151027296.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MF133_RS10095 (MF133_10095)	-	2227760..2228194 (+)	435	WP_042015100.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MF133_RS10100 (MF133_10100)	pilB	2228198..2229904 (+)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MF133_RS10105 (MF133_10105)	pilC	2230032..2231273 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
MF133_RS10110 (MF133_10110)	pilD	2231351..2232226 (+)	876	WP_239054131.1	A24 family peptidase	Machinery gene
MF133_RS10115 (MF133_10115)	coaE	2232245..2232859 (+)	615	WP_239054132.1	dephospho-CoA kinase	-
MF133_RS10120 (MF133_10120)	zapD	2232897..2233619 (+)	723	WP_010675825.1	cell division protein ZapD	-
MF133_RS10125 (MF133_10125)	yacG	2233630..2233824 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
MF133_RS10130 (MF133_10130)	mutT	2233882..2234286 (-)	405	WP_191967205.1	8-oxo-dGTP diphosphatase MutT	-
MF133_RS10135 (MF133_10135)	-	2234295..2235479 (-)	1185	WP_239054133.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32055.19 Da
• Isoelectric Point: 6.8280

>NTDB_id=656162 MF133_RS10110 WP_239054131.1 2231351..2232226(+) (pilD) [Aeromonas caviae strain 211703]
MVPLIEMAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=656162 MF133_RS10110 WP_239054131.1 2231351..2232226(+) (pilD) [Aeromonas caviae strain 211703]
ATGGTGCCTTTGATCGAAATGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ACGGCGACTTCAAACTGCTGGCGGCACTGGGCGCTTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46