Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU25_RS19930 Genome accession   NZ_CP108199
Coordinates   4180238..4181971 (+) Length   577 a.a.
NCBI ID   WP_326716102.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00117     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4175238..4186971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU25_RS19900 (OHU25_19865) - 4176116..4176724 (-) 609 WP_406382621.1 hypothetical protein -
  OHU25_RS19920 (OHU25_19885) - 4178270..4178578 (+) 309 WP_326713129.1 YtxH domain-containing protein -
  OHU25_RS19925 (OHU25_19890) - 4178663..4180102 (+) 1440 WP_326713128.1 FGGY family carbohydrate kinase -
  OHU25_RS19930 (OHU25_19895) rcrP 4180238..4181971 (+) 1734 WP_326716102.1 ABC transporter ATP-binding protein Regulator
  OHU25_RS19935 (OHU25_19900) rcrQ 4181971..4183899 (+) 1929 WP_326713127.1 ABC transporter ATP-binding protein Regulator
  OHU25_RS19940 (OHU25_19905) - 4184049..4185440 (-) 1392 WP_326713126.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62559.64 Da        Isoelectric Point: 6.1921

>NTDB_id=656039 OHU25_RS19930 WP_326716102.1 4180238..4181971(+) (rcrP) [Streptomyces sp. NBC_00117]
MLIRLLRTYLGPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILAFGAIMIAITVVQMVCNIGAVFYGA
RTASALGRDVRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFREANADLTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PSSPVRELRSHGHLEIRDAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TIDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWNALEVAQAKDFVKKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETSEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656039 OHU25_RS19930 WP_326716102.1 4180238..4181971(+) (rcrP) [Streptomyces sp. NBC_00117]
GTGCTCATACGACTTCTTCGGACCTACCTCGGTCCGTACAAGAAACCCATCGGCGTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGGCTTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
CGCACCGCATCCGCGCTCGGACGGGACGTCCGGGCCTCCGTGTTCGACCGTGTGCAGTCCTTCTCGGCGCGCGAGATGGG
CCAGTTCGGGGCACCGTCCCTGATCACCCGCACGACGAACGACGTGCAACAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTGCCCCTGTCGGGCGTG
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGCCTGATCGTGCGCCGCCTGCGGCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGATCTGACCGAGGTCTCCCTCGGCACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCATCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGTCCAGCGTCGTCCCG
CCGTCCTCGCCGGTGCGGGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGACGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTACTCAAGGCCATCCAGGTCACCGCGCGCCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTTCTCGGCCTGGTGCCGCGCCTGTTCGACGCGACCGACGGCGAGGTCCTGGTGAACGGCGTCGACGTGCGC
ACCATCGACCCCGCACTGCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAAGAGCTGTGGAACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAAGAAGCTGGAGAACGGGCTCGACTCCCCGATCTCCCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCACTGCGGGCCGCGCTGGGTCACGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GTGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACGGGCACCCATCACGAGCTGATGGCCGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386