Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   LN244_RS07720 Genome accession   NZ_CP092123
Coordinates   1681432..1682157 (+) Length   241 a.a.
NCBI ID   WP_239042256.1    Uniprot ID   -
Organism   Marinobacterium sediminicola strain 1.7287     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676432..1687157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN244_RS07700 (LN244_07700) - 1676672..1678471 (-) 1800 WP_239042252.1 acyl-CoA dehydrogenase C-terminal domain-containing protein -
  LN244_RS07705 (LN244_07705) - 1679098..1679754 (+) 657 WP_239042253.1 hypothetical protein -
  LN244_RS07710 (LN244_07710) - 1680093..1680254 (+) 162 WP_239042254.1 hypothetical protein -
  LN244_RS07715 (LN244_07715) - 1680420..1681250 (-) 831 WP_239042255.1 enoyl-CoA hydratase-related protein -
  LN244_RS07720 (LN244_07720) ideA 1681432..1682157 (+) 726 WP_239042256.1 endonuclease Regulator
  LN244_RS07725 (LN244_07725) - 1682245..1682889 (-) 645 WP_239042257.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase -
  LN244_RS07730 (LN244_07730) - 1682886..1683575 (-) 690 WP_239042258.1 TIGR04283 family arsenosugar biosynthesis glycosyltransferase -
  LN244_RS07735 (LN244_07735) - 1683572..1685722 (-) 2151 WP_239042259.1 FAD-dependent oxidoreductase -
  LN244_RS07740 (LN244_07740) arsS 1685719..1686681 (-) 963 WP_239042260.1 arsenosugar biosynthesis radical SAM (seleno)protein ArsS -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27589.20 Da        Isoelectric Point: 8.1535

>NTDB_id=656039 LN244_RS07720 WP_239042256.1 1681432..1682157(+) (ideA) [Marinobacterium sediminicola strain 1.7287]
MRLAVGLVALLCLSPVAAEPPSSFASAKKILAADLYRSEQRITFYCGCRFDEQPVPDKPDRTRLTPDAESCGLQPRKNAN
RAARIEWEHVVPAWEFGHQLQCWQEGGRKACQKDTRFRQMEADLYNLVPAVGELNGDRSNFRFGMIPGEPRAYGACDFEV
DFKQRVAEPAEQVRGDIARTYFYMEDRYGLRLSRKQRQLFEAWSRQDPVDQTELQRARRIAVIQGHRNPFVDADVRQAAG
H

Nucleotide


Download         Length: 726 bp        

>NTDB_id=656039 LN244_RS07720 WP_239042256.1 1681432..1682157(+) (ideA) [Marinobacterium sediminicola strain 1.7287]
ATGCGCCTTGCTGTTGGCCTGGTGGCCTTGTTGTGCCTGTCTCCCGTTGCGGCTGAACCGCCGTCATCCTTTGCTTCCGC
CAAGAAAATTCTCGCTGCTGATCTCTACCGGTCAGAGCAGCGCATCACCTTTTACTGCGGCTGTCGCTTTGACGAGCAGC
CCGTACCCGATAAGCCTGATCGTACTCGATTGACACCGGACGCGGAGAGTTGCGGTCTGCAGCCGCGCAAGAATGCCAAC
CGGGCGGCACGGATTGAGTGGGAGCATGTGGTGCCGGCCTGGGAGTTTGGTCATCAATTGCAGTGCTGGCAGGAAGGGGG
GCGCAAGGCGTGTCAAAAGGACACCCGATTCCGTCAGATGGAAGCCGACCTCTACAATCTGGTGCCTGCCGTGGGTGAGT
TGAACGGTGATCGCAGCAATTTCCGTTTTGGCATGATCCCGGGGGAGCCCCGTGCCTATGGCGCATGTGACTTCGAAGTG
GATTTCAAGCAGCGCGTCGCCGAGCCTGCCGAGCAGGTACGGGGTGATATCGCCCGAACCTATTTCTACATGGAAGATCG
CTATGGCCTCAGGCTCAGCCGCAAGCAACGCCAGTTGTTCGAGGCCTGGTCAAGACAGGACCCGGTGGATCAGACTGAGC
TTCAGCGTGCCCGTCGTATCGCCGTGATTCAGGGGCATCGAAATCCTTTTGTGGACGCTGATGTCAGGCAGGCTGCAGGG
CATTGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(42-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

57.759

96.266

0.556
  dns Aliivibrio fischeri ES114

53.138

99.17

0.527
  dns Vibrio cholerae strain A1552

52.79

96.68

0.51
  dns Vibrio parahaemolyticus RIMD 2210633

50.42

98.755

0.498