Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LGL65_RS15505 Genome accession   NZ_CP092110
Coordinates   3022741..3023385 (+) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain LOH112     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017741..3028385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS15480 - 3018171..3018512 (-) 342 WP_014418765.1 hypothetical protein -
  LGL65_RS15485 degQ 3018977..3019117 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LGL65_RS15490 - 3019248..3020144 (+) 897 WP_017419425.1 polyprenyl synthetase family protein -
  LGL65_RS15495 comX 3020159..3020335 (+) 177 WP_017419424.1 competence pheromone ComX -
  LGL65_RS15500 comP 3020354..3022660 (+) 2307 WP_017419423.1 sensor histidine kinase Regulator
  LGL65_RS15505 comA 3022741..3023385 (+) 645 WP_014418762.1 response regulator transcription factor Regulator
  LGL65_RS15510 - 3023407..3023790 (+) 384 WP_017419422.1 hotdog fold thioesterase -
  LGL65_RS15515 mnhG 3023830..3024204 (-) 375 WP_017419421.1 monovalent cation/H(+) antiporter subunit G -
  LGL65_RS15520 - 3024188..3024472 (-) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  LGL65_RS15525 - 3024472..3024948 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  LGL65_RS15530 - 3024954..3026435 (-) 1482 WP_017419418.1 Na+/H+ antiporter subunit D -
  LGL65_RS15535 - 3026428..3026769 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LGL65_RS15540 - 3026769..3027200 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=655977 LGL65_RS15505 WP_014418762.1 3022741..3023385(+) (comA) [Bacillus velezensis strain LOH112]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=655977 LGL65_RS15505 WP_014418762.1 3022741..3023385(+) (comA) [Bacillus velezensis strain LOH112]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86