NTDB

Overview

Name	crp	Type	Regulator
Locus tag	L3Q72_RS01215	Genome accession	NZ_CP092106
Coordinates	256267..256899 (-)	Length	210 a.a.
NCBI ID	WP_004410522.1	Uniprot ID	A0A240EMA6
Organism	Vibrio sp. JC009
Function	promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 251267..261899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Q72_RS01185 (L3Q72_01185)	-	251343..251597 (-)	255	WP_275130883.1	DUF3624 domain-containing protein	-
L3Q72_RS01190 (L3Q72_01190)	-	251888..252178 (+)	291	WP_031493033.1	co-chaperone GroES	-
L3Q72_RS01195 (L3Q72_01195)	groL	252225..253871 (+)	1647	WP_275130884.1	chaperonin GroEL	-
L3Q72_RS01200 (L3Q72_01200)	-	254156..254419 (+)	264	WP_275130885.1	DUF4160 domain-containing protein	-
L3Q72_RS01205 (L3Q72_01205)	-	254419..254934 (+)	516	WP_275130886.1	transcriptional regulator	-
L3Q72_RS01210 (L3Q72_01210)	-	255232..255915 (-)	684	WP_275130887.1	DNA-3-methyladenine glycosylase I	-
L3Q72_RS01215 (L3Q72_01215)	crp	256267..256899 (-)	633	WP_004410522.1	cAMP-activated global transcriptional regulator CRP	Regulator
L3Q72_RS01220 (L3Q72_01220)	-	257144..258013 (-)	870	WP_275130888.1	phosphoribulokinase	-
L3Q72_RS01225 (L3Q72_01225)	-	258045..258257 (-)	213	WP_275130889.1	YheU family protein	-
L3Q72_RS01230 (L3Q72_01230)	-	258273..259244 (-)	972	WP_275130890.1	hydrolase	-
L3Q72_RS01235 (L3Q72_01235)	-	259241..260632 (-)	1392	WP_275130891.1	PLP-dependent aminotransferase family protein	-
L3Q72_RS01240 (L3Q72_01240)	-	260760..261356 (+)	597	WP_275130892.1	LysE family translocator	-
L3Q72_RS01245 (L3Q72_01245)	-	261324..261815 (-)	492	WP_275130893.1	TIGR02444 family protein	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23596.37 Da Isoelectric Point: 7.4009

                                >NTDB_id=655893 L3Q72_RS01215 WP_004410522.1 256267..256899(-) (crp) [Vibrio sp. JC009]

MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED

QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH

PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide

Download Length: 633 bp

                                >NTDB_id=655893 L3Q72_RS01215 WP_004410522.1 256267..256899(-) (crp) [Vibrio sp. JC009]

ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA

GAGTACTCTGATTCATGCTGGTGAAAAGGCTGAAACTCTGTATTACATTGTAAAAGGCTCTGTGGCTGTCCTAATCAAGG

ATGAAGAAGGTAAGGAAATGATTCTTTCTTATCTGAACCAGGGTGACTTTATTGGTGAACTGGGTCTTTTCGAAGAAGAC

CAGGAGCGTACAGCATGGGTTCGCGCTAAATCTCCATGTGAAGTAGCAGAAATTTCATTTAAGAAATTCCGTCAGCTAAT

TCAGGTAAACCCAGACATTCTGATGCGTCTGTCAGCTCAAATGGCAAGCCGCCTTCAGGTAACCAGCCAGAAAGTTGGTG

ACCTTGCGTTCCTTGACGTTACAGGCCGTATCGCACAAACACTTCTGAACCTGGCTAAGCAACCGGATGCAATGACTCAC

CCGGACGGCATGCAGATCAAGATCACCCGTCAGGAGATTGGTCAGATTGTTGGCTGTTCACGTGAAACCGTTGGCCGTAT

CCTGAAGATGCTGGAAGAACAGAATCTGATTTCTGCACACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
crp	Vibrio cholerae strain A1552	97.619	100	0.976
crp	Haemophilus influenzae Rd KW20	75	97.143	0.729
crp	Acinetobacter baumannii D1279779	47.343	98.571	0.467

Detailed information NTG0655893