Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JN531_RS09340 Genome accession   NZ_CP092104
Coordinates   1995095..1996420 (-) Length   441 a.a.
NCBI ID   WP_228348602.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990095..2001420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS09315 (JN531_009315) - 1991233..1991652 (-) 420 WP_228348597.1 ClpXP protease specificity-enhancing factor -
  JN531_RS09320 (JN531_009320) - 1991649..1992254 (-) 606 WP_228348598.1 glutathione S-transferase family protein -
  JN531_RS09325 (JN531_009325) - 1992350..1993096 (-) 747 WP_228348599.1 cytochrome c1 -
  JN531_RS09330 (JN531_009330) - 1993100..1994338 (-) 1239 WP_228348600.1 cytochrome b N-terminal domain-containing protein -
  JN531_RS09335 (JN531_009335) petA 1994338..1994934 (-) 597 WP_228348601.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  JN531_RS09340 (JN531_009340) pilR 1995095..1996420 (-) 1326 WP_228348602.1 sigma-54 dependent transcriptional regulator Regulator
  JN531_RS09345 (JN531_009345) - 1996417..1997997 (-) 1581 WP_228348603.1 ATP-binding protein -
  JN531_RS09350 (JN531_009350) - 1998008..1998232 (-) 225 WP_228348604.1 hypothetical protein -
  JN531_RS09355 (JN531_009355) sucC 1998359..1999522 (+) 1164 WP_228348605.1 ADP-forming succinate--CoA ligase subunit beta -
  JN531_RS09360 (JN531_009360) sucD 1999531..2000397 (+) 867 WP_228348606.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47915.99 Da        Isoelectric Point: 6.5653

>NTDB_id=655878 JN531_RS09340 WP_228348602.1 1995095..1996420(-) (pilR) [Flagellatimonas centrodinii strain R2A-3]
MKAAVLIVDDEADIRELVEITLSRMGLTTEAAGSLAEAHDRLACHSFDLCITDMRLPDGSGIDLVRHIGEHCADTPVAVI
TAYGSAQAAVESLKAGAFDFVSKPVDLQVLRKLVRSALDLRGAAVESRGTEPTGLLGQHPSIDHLRQLVGRLARSQAPVH
IAGESGTGKELVARMIHAQSPRAVGAFVPVNCGAIPSELMESEFFGHLKGAFTGAIKDKTGLFQAAEGGTLFLDEVADLP
LHMQVKLLRALQERAIRPVGSDSEQPVNVRVISATHESLEGCVADGRFRQDLYYRLNVIEVRTPPLRDRSGDIPLLTHHI
LERLARTNGWPRPPTLDDAALARLVAYPFPGNVRELENILERALTLCDGRRITATDLQLRETAALTPAGAPALDSQMDAV
ERQAILEALEKARFNKTRAAELLGMSFRSLRYRIKKLGLDV

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=655878 JN531_RS09340 WP_228348602.1 1995095..1996420(-) (pilR) [Flagellatimonas centrodinii strain R2A-3]
ATGAAAGCTGCCGTCCTGATTGTCGACGACGAGGCCGATATCCGTGAGCTGGTGGAGATCACCCTGTCGCGGATGGGCCT
CACCACCGAGGCCGCGGGCTCGCTCGCCGAGGCGCACGATCGGCTGGCCTGCCACAGCTTCGACCTGTGCATCACCGACA
TGCGGCTGCCCGACGGTAGTGGCATTGACCTGGTCCGGCATATCGGCGAGCACTGCGCAGACACGCCAGTGGCGGTGATC
ACCGCCTATGGCAGCGCGCAGGCTGCGGTGGAGAGCCTGAAGGCCGGCGCCTTTGATTTCGTCTCCAAGCCTGTGGATCT
GCAAGTCCTGCGCAAGCTGGTGCGCAGCGCCCTGGACTTGCGCGGGGCGGCCGTGGAATCTCGCGGGACGGAGCCCACCG
GATTGCTGGGCCAGCATCCGTCGATCGATCACCTGCGGCAGCTGGTCGGCCGTCTGGCGCGATCGCAGGCCCCGGTTCAC
ATCGCCGGCGAGTCGGGGACGGGCAAGGAACTGGTGGCGCGCATGATCCACGCCCAGAGCCCACGGGCGGTCGGCGCCTT
CGTACCGGTGAACTGCGGGGCCATCCCCAGCGAGCTGATGGAGAGCGAATTCTTCGGCCATCTCAAGGGTGCGTTTACCG
GTGCGATCAAGGACAAGACCGGCCTGTTCCAGGCTGCCGAGGGCGGCACGCTGTTCCTTGACGAGGTGGCCGACCTGCCG
TTGCACATGCAGGTCAAACTGCTGCGGGCGCTGCAGGAACGTGCCATCCGCCCGGTCGGCAGCGACAGCGAGCAACCGGT
GAACGTGCGGGTGATCTCGGCCACCCACGAATCCCTTGAGGGGTGTGTCGCCGACGGCCGATTTCGCCAGGACCTGTACT
ACCGCCTCAATGTCATCGAGGTGCGGACGCCGCCATTGCGCGACCGGTCCGGCGATATTCCGCTGCTGACTCATCACATT
CTCGAACGCCTGGCGCGGACCAACGGCTGGCCACGGCCGCCAACGCTGGATGACGCCGCACTGGCGCGGCTGGTGGCGTA
TCCGTTCCCGGGCAACGTCCGGGAGCTGGAAAACATCCTCGAGCGGGCCTTGACCCTCTGTGACGGCCGCCGCATTACCG
CCACCGACCTCCAGTTGCGTGAGACCGCAGCACTGACGCCTGCTGGCGCGCCTGCGCTGGACTCGCAAATGGACGCTGTC
GAACGCCAGGCCATCCTCGAGGCACTGGAAAAGGCCCGGTTCAACAAGACCCGTGCGGCAGAACTGCTGGGGATGTCATT
CCGTTCACTGCGCTACCGGATCAAGAAGCTCGGCCTCGACGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(397-437)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.326

100

0.599
  pilR Acinetobacter baumannii strain A118

46.855

100

0.49
  luxO Vibrio cholerae strain A1552

36.468

98.866

0.361