Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   MA850_RS07890 Genome accession   NZ_CP092034
Coordinates   1535696..1536283 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530696..1541283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS07870 (MA850_07870) - 1531444..1532208 (+) 765 WP_052786571.1 TIGR02757 family protein -
  MA850_RS07875 (MA850_07875) - 1532212..1532976 (+) 765 WP_002855821.1 TSUP family transporter -
  MA850_RS07880 (MA850_07880) ctsF 1532969..1534150 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  MA850_RS07885 (MA850_07885) ctsE 1534147..1535706 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MA850_RS07890 (MA850_07890) ctsX 1535696..1536283 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MA850_RS07895 (MA850_07895) ctsP 1536287..1536895 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MA850_RS07900 (MA850_07900) ctsD 1536888..1538300 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA850_RS07905 (MA850_07905) ctsR 1538278..1538589 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=655271 MA850_RS07890 WP_002851370.1 1535696..1536283(-) (ctsX) [Campylobacter jejuni subsp. jejuni strain 15516C]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=655271 MA850_RS07890 WP_002851370.1 1535696..1536283(-) (ctsX) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1