Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   MA850_RS07880 Genome accession   NZ_CP092034
Coordinates   1532969..1534150 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527969..1539150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS07850 (MA850_07850) - 1528513..1528854 (+) 342 WP_002784057.1 hypothetical protein -
  MA850_RS07855 (MA850_07855) flgM 1528917..1529114 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  MA850_RS07860 (MA850_07860) - 1529157..1529591 (+) 435 WP_002876049.1 flagellar protein FlgN -
  MA850_RS07865 (MA850_07865) flgK 1529601..1531427 (+) 1827 WP_238513309.1 flagellar hook-associated protein FlgK -
  MA850_RS07870 (MA850_07870) - 1531444..1532208 (+) 765 WP_052786571.1 TIGR02757 family protein -
  MA850_RS07875 (MA850_07875) - 1532212..1532976 (+) 765 WP_002855821.1 TSUP family transporter -
  MA850_RS07880 (MA850_07880) ctsF 1532969..1534150 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  MA850_RS07885 (MA850_07885) ctsE 1534147..1535706 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MA850_RS07890 (MA850_07890) ctsX 1535696..1536283 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MA850_RS07895 (MA850_07895) ctsP 1536287..1536895 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MA850_RS07900 (MA850_07900) ctsD 1536888..1538300 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA850_RS07905 (MA850_07905) ctsR 1538278..1538589 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=655269 MA850_RS07880 WP_002851165.1 1532969..1534150(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 15516C]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=655269 MA850_RS07880 WP_002851165.1 1532969..1534150(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99