Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MA850_RS07905 Genome accession   NZ_CP092034
Coordinates   1538278..1538589 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533278..1543589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS07885 (MA850_07885) ctsE 1534147..1535706 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MA850_RS07890 (MA850_07890) ctsX 1535696..1536283 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MA850_RS07895 (MA850_07895) ctsP 1536287..1536895 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MA850_RS07900 (MA850_07900) ctsD 1536888..1538300 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA850_RS07905 (MA850_07905) ctsR 1538278..1538589 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  MA850_RS07910 (MA850_07910) nifJ 1538613..1542173 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MA850_RS07915 (MA850_07915) - 1542266..1542907 (-) 642 WP_057035815.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=655274 MA850_RS07905 WP_002855438.1 1538278..1538589(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 15516C]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=655274 MA850_RS07905 WP_002855438.1 1538278..1538589(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 15516C]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1