Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   L3V77_RS16025 Genome accession   NZ_CP091975
Coordinates   3508006..3508638 (+) Length   210 a.a.
NCBI ID   WP_102523323.1    Uniprot ID   A0A2N8ZG72
Organism   Vibrio sp. DW001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3503006..3513638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS16000 (L3V77_15980) - 3503488..3504084 (-) 597 WP_275135014.1 LysE family translocator -
  L3V77_RS16005 (L3V77_15985) - 3504212..3505603 (+) 1392 WP_275135015.1 PLP-dependent aminotransferase family protein -
  L3V77_RS16010 (L3V77_15990) - 3505600..3506571 (+) 972 WP_275135016.1 hydrolase -
  L3V77_RS16015 (L3V77_15995) - 3506587..3506799 (+) 213 WP_275135017.1 YheU family protein -
  L3V77_RS16020 (L3V77_16000) - 3506890..3507759 (+) 870 WP_195704533.1 phosphoribulokinase -
  L3V77_RS16025 (L3V77_16005) crp 3508006..3508638 (+) 633 WP_102523323.1 cAMP-activated global transcriptional regulator CRP Regulator
  L3V77_RS16030 (L3V77_16010) - 3508717..3509190 (-) 474 WP_275135018.1 GNAT family N-acetyltransferase -
  L3V77_RS16035 (L3V77_16015) - 3509330..3509554 (+) 225 WP_275135019.1 hypothetical protein -
  L3V77_RS16040 (L3V77_16020) - 3509721..3509894 (+) 174 WP_275135020.1 hypothetical protein -
  L3V77_RS16045 (L3V77_16025) - 3509891..3510064 (+) 174 WP_275135020.1 hypothetical protein -
  L3V77_RS16050 (L3V77_16030) groL 3510117..3511763 (-) 1647 WP_195704534.1 chaperonin GroEL -
  L3V77_RS16055 (L3V77_16035) - 3511833..3512123 (-) 291 WP_275135021.1 co-chaperone GroES -
  L3V77_RS16060 (L3V77_16040) - 3512377..3512646 (+) 270 WP_275135022.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23598.34 Da        Isoelectric Point: 7.4009

>NTDB_id=654800 L3V77_RS16025 WP_102523323.1 3508006..3508638(+) (crp) [Vibrio sp. DW001]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=654800 L3V77_RS16025 WP_102523323.1 3508006..3508638(+) (crp) [Vibrio sp. DW001]
ATGGTTCTTGGTAAACCTCAAACCGATCCAACGTTAGAGTGGTTTCTTTCGCATTGTCATATTCATAAATATCCTTCCAA
AAGTACGCTTATTCACGCTGGAGAAAAAGCGGAAACTCTGTATTACATTGTGAAAGGCTCTGTAGCTGTGCTTATCAAGG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGAGACTTCATCGGTGAGCTAGGTCTATTCGAAGAAGAT
CAAGAGCGTACCGCATGGGTTCGTGCTAAATCACCATGTGAAGTAGCTGAGATTTCGTTTAAGAAATTCCGTCAGCTTAT
TCAAGTTAATCCTGACATTTTGATGCGTCTTTCAGCTCAAATGGCAAGCCGTCTACAAACGACTAGCCAAAAAGTTGGTG
ACTTAGCATTCTTAGATGTGACGGGTCGTATTGCTCAAACACTTCTAAACTTGGCAAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATTAAGATCACTCGTCAAGAGATTGGTCAGATTGTAGGTTGTTCACGTGAAACCGTTGGTCGTAT
TCTTAAGATGCTTGAAGAACAGAATTTAATTTCTGCTCACGGTAAAACTATCGTAGTTTACGGTACACGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZG72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467