Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L5I17_RS09115 Genome accession   NZ_CP091901
Coordinates   1854264..1854737 (-) Length   157 a.a.
NCBI ID   WP_002404184.1    Uniprot ID   A0A2S7M083
Organism   Enterococcus faecalis strain 59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1849264..1859737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5I17_RS09080 (L5I17_09080) - 1849309..1849899 (-) 591 WP_002413228.1 hypothetical protein -
  L5I17_RS09085 (L5I17_09085) - 1850384..1850674 (-) 291 WP_002413227.1 hypothetical protein -
  L5I17_RS09090 (L5I17_09090) - 1850693..1851103 (-) 411 WP_002413226.1 hypothetical protein -
  L5I17_RS09095 (L5I17_09095) traF 1851120..1851635 (-) 516 WP_002365995.1 conjugal transfer protein TraF -
  L5I17_RS09100 (L5I17_09100) - 1852041..1853333 (-) 1293 WP_238468012.1 hypothetical protein -
  L5I17_RS09105 (L5I17_09105) - 1853427..1853816 (-) 390 WP_002404182.1 hypothetical protein -
  L5I17_RS09110 (L5I17_09110) - 1853809..1854231 (-) 423 WP_002404183.1 hypothetical protein -
  L5I17_RS09115 (L5I17_09115) ssb 1854264..1854737 (-) 474 WP_002404184.1 single-stranded DNA-binding protein Machinery gene
  L5I17_RS09120 (L5I17_09120) - 1854745..1854891 (-) 147 WP_010709610.1 hypothetical protein -
  L5I17_RS09125 (L5I17_09125) - 1854905..1855318 (-) 414 WP_002358251.1 hypothetical protein -
  L5I17_RS09130 (L5I17_09130) - 1855322..1855657 (-) 336 WP_002358250.1 thioredoxin fold domain-containing protein -
  L5I17_RS09135 (L5I17_09135) - 1855675..1856064 (-) 390 WP_002358476.1 hypothetical protein -
  L5I17_RS09140 (L5I17_09140) - 1856066..1856344 (-) 279 WP_002404187.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17491.36 Da        Isoelectric Point: 4.9225

>NTDB_id=654547 L5I17_RS09115 WP_002404184.1 1854264..1854737(-) (ssb) [Enterococcus faecalis strain 59]
MINNVTLVGRLANDVDLRYTSSGLAVGQFRLAVNRNFTNQSGEREADFISCAIWRKAAESLANYARKGSLLGITGRIQTR
NYDNQQGQRVYVTEVIVENFQLLESKEISEQRRANASTPVTNGQQANNQQQTPLPDPLDPFSKESSPVNISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=654547 L5I17_RS09115 WP_002404184.1 1854264..1854737(-) (ssb) [Enterococcus faecalis strain 59]
ATGATTAATAATGTTACGTTAGTTGGGCGTTTAGCTAATGATGTGGATTTAAGGTATACATCAAGTGGGCTTGCAGTTGG
ACAATTTCGTTTAGCAGTCAATCGGAATTTTACCAATCAATCTGGGGAGCGAGAAGCGGATTTTATTAGTTGTGCGATAT
GGCGCAAAGCGGCAGAATCGCTTGCCAATTACGCACGTAAAGGTAGCTTACTTGGAATTACTGGTCGTATTCAGACGCGA
AACTATGATAACCAGCAAGGACAACGTGTTTATGTGACGGAAGTGATTGTAGAAAATTTTCAATTGTTAGAATCCAAAGA
AATAAGCGAACAACGTCGGGCGAATGCTTCTACGCCTGTAACCAATGGGCAGCAGGCCAATAACCAACAGCAGACACCAC
TTCCTGATCCGCTTGATCCTTTCTCAAAGGAGTCTAGCCCAGTAAATATTTCGGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7M083

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382