Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG975_RS25425 Genome accession   NZ_CP108126
Coordinates   5658191..5658874 (+) Length   227 a.a.
NCBI ID   WP_406331668.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5653191..5663874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS25410 (OG975_25320) - 5654090..5655718 (+) 1629 WP_406331665.1 histidine kinase -
  OG975_RS25415 (OG975_25325) vraR 5655715..5656395 (+) 681 WP_406331666.1 response regulator Regulator
  OG975_RS25420 (OG975_25330) - 5656848..5658194 (+) 1347 WP_406331667.1 sensor histidine kinase -
  OG975_RS25425 (OG975_25335) vraR 5658191..5658874 (+) 684 WP_406331668.1 response regulator Regulator
  OG975_RS25430 (OG975_25340) - 5659040..5660260 (+) 1221 WP_406331669.1 cytochrome P450 -
  OG975_RS25435 (OG975_25345) - 5660350..5661990 (-) 1641 WP_406331670.1 ABC transporter permease -
  OG975_RS25440 (OG975_25350) - 5661987..5662904 (-) 918 WP_406331671.1 ATP-binding cassette domain-containing protein -
  OG975_RS25445 (OG975_25355) - 5663021..5663527 (+) 507 WP_406331672.1 GbsR/MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24220.90 Da        Isoelectric Point: 4.7385

>NTDB_id=654425 OG975_RS25425 WP_406331668.1 5658191..5658874(+) (vraR) [Streptomyces sp. NBC_00203]
MTGGTSGTIRVLIADDQVMVREGFSVLLGAMPDIEVVGEAVNGRDAVERVRELAPDVVLMDIRMPEMNGIEATREIVAAD
GAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLADAPRLSSTAQAA
YGDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=654425 OG975_RS25425 WP_406331668.1 5658191..5658874(+) (vraR) [Streptomyces sp. NBC_00203]
ATGACGGGCGGCACCAGCGGCACCATTCGCGTACTGATCGCCGACGACCAGGTGATGGTCCGCGAGGGCTTCTCCGTGCT
GCTCGGCGCGATGCCGGACATCGAGGTGGTCGGCGAGGCGGTGAACGGCCGGGACGCGGTCGAGCGGGTCCGTGAGCTCG
CACCGGACGTCGTGCTGATGGACATCCGGATGCCGGAGATGAACGGGATCGAGGCGACCCGGGAGATCGTCGCCGCGGAC
GGTGCCGCGAAGGTGCTGGTGCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGAGCCTCCGG
CTTCCTGCTCAAGGATGCCTCGGCGCGGCAGCTCGCCGATGGGGTGAGGGTGGTGGCGGCCGGGGAGGCGCTGCTCGCTC
CCTCCGTCACCAAGCGGCTGATCACCGAGTTCTCCAAGCTCGCGGACGCGCCCCGGCTCTCGTCCACGGCGCAGGCGGCG
TACGGGGATCTGACCGAGCGGGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCGGGGCG
TCTCGTTGTCGCCGAGTCCACGATCAAGACCCATGTGAGCCGCATCCTGGTGAAGCTGGGCCTGCGGGACCGAACCCAGG
CGGCGGTGTTCGCGTACGAGGCACGGTTGGTCACGCCGAGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

95.595

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

40.708

99.559

0.405