Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG975_RS25415 Genome accession   NZ_CP108126
Coordinates   5655715..5656395 (+) Length   226 a.a.
NCBI ID   WP_406331666.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5650715..5661395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS25395 (OG975_25310) - 5651604..5652623 (+) 1020 WP_406331662.1 alpha/beta hydrolase -
  OG975_RS25400 - 5652547..5652918 (-) 372 WP_406331663.1 pentapeptide repeat-containing protein -
  OG975_RS25405 (OG975_25315) - 5652862..5654079 (+) 1218 WP_406331664.1 acyltransferase -
  OG975_RS25410 (OG975_25320) - 5654090..5655718 (+) 1629 WP_406331665.1 histidine kinase -
  OG975_RS25415 (OG975_25325) vraR 5655715..5656395 (+) 681 WP_406331666.1 response regulator Regulator
  OG975_RS25420 (OG975_25330) - 5656848..5658194 (+) 1347 WP_406331667.1 sensor histidine kinase -
  OG975_RS25425 (OG975_25335) vraR 5658191..5658874 (+) 684 WP_406331668.1 response regulator Regulator
  OG975_RS25430 (OG975_25340) - 5659040..5660260 (+) 1221 WP_406331669.1 cytochrome P450 -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24439.13 Da        Isoelectric Point: 4.9745

>NTDB_id=654424 OG975_RS25415 WP_406331666.1 5655715..5656395(+) (vraR) [Streptomyces sp. NBC_00203]
MTSASGTIRVLIADDQQMVRQGFTVLLNTQPDIEVVGQAVDGLDAIVKVAELAPDVVLMDIRMPELGGIEATRRITEKTP
HIKVLVLTTFDLDEYVYDALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGE
LTERETEVLAHIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=654424 OG975_RS25415 WP_406331666.1 5655715..5656395(+) (vraR) [Streptomyces sp. NBC_00203]
ATGACAAGCGCGAGCGGCACCATCCGCGTACTGATCGCAGACGACCAGCAGATGGTCCGCCAGGGCTTCACCGTGCTGCT
CAACACCCAGCCCGACATCGAGGTGGTCGGCCAGGCGGTCGACGGCCTCGACGCGATCGTCAAAGTCGCCGAGCTCGCCC
CGGACGTCGTCCTGATGGACATCCGCATGCCCGAGCTAGGCGGCATCGAGGCCACCCGCCGCATCACCGAGAAGACCCCC
CACATCAAGGTCCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTGTACGACGCCCTGCGCGCCGGCGCCTCCGGTTT
CCTCCTCAAGGACGCGTCCGCCGACCAGCTCGCCGAGGCGGTACGGGTGGTAGCGGCGGGCGACGCCCTGCTCGCCCCAG
GCATCACCCGCCGCCTCATCGCCGAGTTCTCCCGCCTCGACTCCACCCCCCGCGCCCCCCTCAAGCAGCGCGTGGGCGAA
CTGACCGAACGCGAGACGGAAGTCCTCGCACACATCGCTCAGGGCCTGTCGAACGCGGAGATCGCCGAACGCCTGGTGGT
AGCCGAACAGACCGTGAAGACCCACGTAGGCCGCATCCTCGTAAAACTGGGCCTACGCGACCGCACCCAGGCAGCGGTCT
TCGCCTACGAGTCGGGCCTGGTCCGCCCGTCGGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-122)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

95.575

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

42.601

98.673

0.42