Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SUTH_RS14960 Genome accession   NZ_AP012547
Coordinates   3132500..3133870 (-) Length   456 a.a.
NCBI ID   WP_041100373.1    Uniprot ID   W0SHE1
Organism   Sulfuritalea hydrogenivorans sk43H strain DSM 22779     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3127500..3138870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUTH_RS14945 (SUTH_03001) - 3129340..3130500 (+) 1161 WP_041100371.1 pyridoxal phosphate-dependent aminotransferase -
  SUTH_RS19140 (SUTH_03002) - 3130708..3131331 (-) 624 WP_041100372.1 histone H1-like DNA-binding protein -
  SUTH_RS19460 (SUTH_03003) - 3131453..3131752 (-) 300 WP_148312950.1 hypothetical protein -
  SUTH_RS14955 (SUTH_03004) ampD 3131946..3132476 (-) 531 WP_041102417.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  SUTH_RS14960 (SUTH_03005) pilR 3132500..3133870 (-) 1371 WP_041100373.1 sigma-54 dependent transcriptional regulator Regulator
  SUTH_RS14965 (SUTH_03006) - 3133861..3135447 (-) 1587 WP_041100374.1 PAS domain-containing sensor histidine kinase -
  SUTH_RS14970 (SUTH_03007) - 3135444..3135662 (-) 219 WP_041100375.1 PP0621 family protein -
  SUTH_RS14980 (SUTH_03009) - 3135856..3136785 (-) 930 WP_197539736.1 polyprenyl synthetase family protein -
  SUTH_RS14985 (SUTH_03010) - 3136939..3137703 (-) 765 WP_041100376.1 LytTR family DNA-binding domain-containing protein -
  SUTH_RS14990 (SUTH_03011) - 3137700..3138731 (-) 1032 WP_231851026.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49707.17 Da        Isoelectric Point: 6.5923

>NTDB_id=65360 SUTH_RS14960 WP_041100373.1 3132500..3133870(-) (pilR) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
MSLKNERRPRCRGEAKRVLVVDDEADIRELLDLTLARMGLHADCVGSLAEARRMLVGQRYQLCLTDMRLPDGEGLELVRH
IAATVADLPVAVITAHGSAENAVSALKAGAFDYIAKPVSLDQLRGMVKSALELPSPDSDGGIGGESGLLGQSTAIGQVRM
LIDRVARSQAPVHISGESGSGKELAARLIHTLGARRDRAFVPVNCGAIPENLMESEFFGYRKGAFTGASDDREGFFHVAD
GGTLFLDEVAELPLTMQVKLLRAIQEKRVRKVGATTEEAVDVRVICATHQDLKVLVEKGRFRQDLFYRLNVIELRMPALR
ECREDIPMLAQHILGRLARAADLEPPLLTAPALEALQGYPFPGNVRELENVMERALALMAGDRIDVVDLNLAPSQLTGAT
TSAVGGSLQDHLDQVERQAILDALKQSNNNRTAAARLLGVTFRSLRYRMARLGMNE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=65360 SUTH_RS14960 WP_041100373.1 3132500..3133870(-) (pilR) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
ATGTCACTGAAGAATGAACGCCGCCCCCGTTGTCGTGGCGAGGCCAAGCGGGTACTGGTGGTCGACGACGAGGCGGACAT
CCGCGAGTTGCTCGACCTGACGCTGGCGCGCATGGGGCTCCACGCGGACTGCGTCGGATCGCTCGCCGAGGCGCGCCGCA
TGCTGGTCGGTCAGCGCTACCAGTTATGCCTGACCGACATGCGCCTGCCCGATGGCGAGGGCCTGGAGCTGGTGCGTCAC
ATTGCCGCCACCGTTGCCGACCTGCCGGTGGCGGTGATTACGGCGCATGGCAGCGCGGAGAACGCCGTATCCGCGCTCAA
GGCCGGGGCCTTCGACTACATCGCCAAGCCCGTGTCGCTCGATCAGTTGCGCGGCATGGTCAAGTCGGCGCTCGAGTTGC
CCAGCCCCGATTCGGATGGCGGCATCGGCGGCGAGTCCGGACTGCTTGGGCAGTCGACGGCAATCGGGCAAGTCCGCATG
CTGATCGATCGCGTGGCACGCAGTCAGGCTCCGGTTCATATCTCGGGCGAGTCAGGGAGCGGCAAGGAGCTCGCGGCGCG
ACTGATCCACACCCTGGGCGCCCGCCGCGACCGCGCTTTTGTGCCGGTCAATTGCGGGGCGATCCCCGAGAACCTCATGG
AAAGCGAGTTTTTCGGATATCGCAAGGGTGCATTCACCGGCGCCAGCGATGATCGTGAAGGCTTCTTTCATGTGGCCGAT
GGCGGCACCCTGTTTCTGGACGAGGTTGCGGAACTGCCCTTGACGATGCAGGTCAAGCTGTTGCGGGCGATTCAGGAAAA
GCGGGTGCGCAAGGTGGGCGCCACCACCGAGGAGGCGGTCGATGTGCGGGTGATTTGCGCTACGCATCAGGATCTCAAGG
TGCTGGTCGAGAAGGGGCGGTTCCGCCAGGATTTGTTCTACCGCCTCAATGTCATCGAGTTGCGAATGCCGGCCTTGAGG
GAATGTCGCGAAGACATCCCGATGCTGGCGCAACACATTCTGGGCCGCCTGGCCCGGGCTGCCGACCTGGAGCCGCCGCT
GCTGACCGCCCCGGCCCTTGAAGCTTTGCAGGGTTATCCCTTCCCGGGCAACGTGCGGGAACTTGAAAACGTGATGGAGC
GCGCCCTGGCGCTGATGGCCGGCGACCGTATCGACGTGGTGGATCTCAATCTGGCGCCATCCCAATTGACTGGCGCCACC
ACCAGCGCAGTCGGCGGCTCCCTGCAGGATCACCTGGACCAGGTGGAGCGCCAGGCGATTCTCGATGCCCTCAAGCAGTC
GAACAACAATCGCACTGCGGCTGCAAGGCTGCTGGGAGTCACCTTCCGCTCATTGCGCTACCGTATGGCGCGACTGGGAA
TGAACGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(412-451)

Response regulator receiver domain (Response_reg)

(18-127)

Sigma-54 interaction domain (Sigma54_activat)

(148-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0SHE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.982

97.368

0.555
  pilR Acinetobacter baumannii strain A118

45.316

100

0.456

Multiple sequence alignment