Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG764_RS24380 Genome accession   NZ_CP108095
Coordinates   5546114..5547199 (+) Length   361 a.a.
NCBI ID   WP_328970555.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5541114..5552199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS24365 (OG764_24360) - 5541253..5542551 (+) 1299 WP_328970552.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG764_RS24370 (OG764_24365) - 5542646..5543923 (+) 1278 WP_328970553.1 FAD-dependent oxidoreductase -
  OG764_RS24375 (OG764_24370) dnaG 5543958..5545865 (+) 1908 WP_328970554.1 DNA primase -
  OG764_RS24380 (OG764_24375) rpoS 5546114..5547199 (+) 1086 WP_328970555.1 RNA polymerase sigma factor Regulator
  OG764_RS24385 (OG764_24380) rcrQ 5547285..5549207 (-) 1923 WP_328970556.1 ABC transporter ATP-binding protein Regulator
  OG764_RS24390 (OG764_24385) rcrP 5549204..5550937 (-) 1734 WP_328970557.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40361.76 Da        Isoelectric Point: 4.8265

>NTDB_id=653545 OG764_RS24380 WP_328970555.1 5546114..5547199(+) (rpoS) [Streptomyces sp. NBC_00239]
MQTQTLTEAVTPSSRAEHPEADAPEADVSEAEEPEPVEAGEAALDEEAPAARKRTESAGPTSDLFRQYLREIGRIPLLTA
AEEVELARRVEAGLFAEEKLGNAADLDSQLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLG
LIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAGHLELTP
ERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPAESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPR
TLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=653545 OG764_RS24380 WP_328970555.1 5546114..5547199(+) (rpoS) [Streptomyces sp. NBC_00239]
GTGCAGACCCAGACCCTGACCGAAGCCGTGACCCCGTCGAGCCGGGCCGAACACCCCGAGGCCGACGCGCCCGAGGCGGA
CGTGTCCGAGGCCGAAGAGCCGGAGCCCGTGGAGGCGGGCGAGGCTGCACTCGACGAGGAGGCGCCCGCGGCCCGGAAGC
GGACCGAGAGCGCCGGACCCACCTCCGACCTGTTCCGGCAGTACCTGCGGGAGATCGGGCGGATACCCCTGCTCACCGCC
GCGGAGGAAGTGGAACTCGCCCGGCGGGTCGAGGCCGGACTCTTCGCCGAGGAGAAGCTGGGCAACGCGGCCGACCTGGA
CTCCCAGCTCGCCGTCGACCTCGACCGGCTCGTGGTGATGGGCCGGATGGCCAAGCGCCGCCTCATCGAGGCCAACCTGC
GCCTGGTCGTCTCCGTCGCCAAACGGTACGTGGGCCGCGGCCTGACCATGCTCGACCTGGTCCAGGAGGGCAACCTCGGC
CTCATACGCGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCCACCTACGCGACCTGGTGGATCCGCCAGGC
CATGTCCCGGGCCCTCGCCGACCAGGCCCGCACCATCCGGGTCCCCGTGCACGTCGTCGAGCTGATCAACCGGGTCGTGC
GGGTCCAGCGCCGGATGCTCCAGGAACGCGGCTACGAGCCCACCGCCGAAGAAGTCGCCGGACACCTGGAACTGACGCCC
GAACGGGTCCTGGAGGTGCTCCGGCTCGCCCAGGAGCCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGACGTCGC
GCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCCCCGGCCGAGTCCGCCGCGTTCTTCCTGCTCCGCGAACACCTGG
AGGCCGTGCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAGCTGCGCTACGGACTCGCCGACGGGCGGCCCCGC
ACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACCCGCGAACGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCT
CCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(128-197)

Sigma-70 region 3 (Sigma70_r3)

(207-283)

Sigma-70, region 4 (Sigma70_r4)

(296-348)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(63-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.846

90.028

0.377