Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG764_RS24385 Genome accession   NZ_CP108095
Coordinates   5547285..5549207 (-) Length   640 a.a.
NCBI ID   WP_328970556.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5542285..5554207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS24370 (OG764_24365) - 5542646..5543923 (+) 1278 WP_328970553.1 FAD-dependent oxidoreductase -
  OG764_RS24375 (OG764_24370) dnaG 5543958..5545865 (+) 1908 WP_328970554.1 DNA primase -
  OG764_RS24380 (OG764_24375) rpoS 5546114..5547199 (+) 1086 WP_328970555.1 RNA polymerase sigma factor Regulator
  OG764_RS24385 (OG764_24380) rcrQ 5547285..5549207 (-) 1923 WP_328970556.1 ABC transporter ATP-binding protein Regulator
  OG764_RS24390 (OG764_24385) rcrP 5549204..5550937 (-) 1734 WP_328970557.1 ABC transporter ATP-binding protein Regulator
  OG764_RS24395 (OG764_24390) - 5551153..5552592 (-) 1440 WP_328970558.1 FGGY family carbohydrate kinase -
  OG764_RS24400 (OG764_24395) - 5552751..5553050 (-) 300 WP_328970559.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68988.54 Da        Isoelectric Point: 5.1112

>NTDB_id=653546 OG764_RS24385 WP_328970556.1 5547285..5549207(-) (rcrQ) [Streptomyces sp. NBC_00239]
MSGPGGRMMMGPAQKSMDFKGSGKRLLKQLAQDKAKLWGMVAAVVGSVAMSVSGPKILGEATDLVFAGIVGRQMEPGLTK
EQALDGLRAKGEGGMADMLSGTDFTPGEGIDFHAVGVVALWALLVFTLAGLLMLVATRLSNHVMNGMVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTLGQLMNSLLTIVGVLAMMFWISPLLALVALVTVPVSVFIAARIGKKS
QPQFVAQWKTTGVLNAHIEEMYSGHTLVKVFGRQQESADAFAESNEALYRASFRAQFVSGLMQPVMFLVSNINYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIYELLDAPEQEPDTELPERPAELKGQVTLDRV
AFRYEPDKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRICLDGVDVARMTREELRSGVGMVLQDTWL
FGGTIAENIAYGAAREVTRGEIEEAARAAHADRFIRTLPEGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHGELLAAQGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=653546 OG764_RS24385 WP_328970556.1 5547285..5549207(-) (rcrQ) [Streptomyces sp. NBC_00239]
ATGAGCGGGCCCGGTGGACGGATGATGATGGGGCCGGCCCAGAAGTCGATGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GAAACAGCTGGCGCAGGACAAGGCGAAGTTGTGGGGCATGGTCGCGGCCGTGGTCGGCAGCGTCGCCATGTCGGTGTCCG
GCCCGAAGATCCTCGGCGAGGCAACCGACCTGGTGTTCGCGGGGATCGTGGGCCGTCAGATGGAGCCGGGGCTCACCAAG
GAGCAGGCCCTGGACGGGCTGCGCGCCAAGGGCGAGGGCGGCATGGCGGACATGCTGTCGGGGACCGACTTCACGCCGGG
CGAGGGCATCGATTTCCATGCGGTCGGCGTGGTGGCGCTGTGGGCGCTGCTGGTGTTCACGCTGGCGGGCCTGCTGATGC
TGGTGGCGACGCGGCTGTCGAACCACGTGATGAACGGCATGGTCTACCGGATGCGCGAGGAGCTGCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATCGACAACATCGG
GCAGACCCTCCAGCAGACGCTGGGGCAGCTGATGAACTCGCTGCTGACCATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGGTGTCGGTGTTCATCGCGGCGCGGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACCACCGGTGTGCTGAACGCACACATCGAGGAGATGTACTCGGGCCACACGCT
GGTGAAGGTGTTCGGCCGGCAGCAGGAGTCCGCGGACGCGTTCGCCGAGTCGAACGAGGCGCTGTACCGGGCTTCGTTCC
GGGCGCAGTTCGTCAGCGGTCTGATGCAGCCGGTGATGTTCCTCGTGTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGCCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGTTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCCTCCGCCGAGCGGATCTACGAGCTGCTGG
ACGCACCCGAGCAGGAGCCGGACACCGAGCTGCCGGAGCGGCCGGCGGAGCTCAAGGGGCAGGTGACCCTGGACCGGGTG
GCGTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGGACCTGTCGCTGTCGGTGGAGCCCGGCCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCGGGCAAGACCACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGGCGGATCTGCC
TGGACGGGGTGGACGTCGCGCGCATGACCCGCGAGGAGCTGCGGTCGGGCGTCGGGATGGTCCTCCAGGACACCTGGCTG
TTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCGGCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGCGGCGCG
CGCGGCGCACGCCGACCGGTTCATCCGGACCCTGCCGGAGGGCTACGACACGGTCCTGGACGACGAGGGTGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTCCTCGACGAGGCGACG
AGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGGCGGACCTCGTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGGGCACGC
ACGGCGAGCTGCTGGCGGCGCAGGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTGGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.563

0.389