Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG764_RS24390 Genome accession   NZ_CP108095
Coordinates   5549204..5550937 (-) Length   577 a.a.
NCBI ID   WP_328970557.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5544204..5555937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS24380 (OG764_24375) rpoS 5546114..5547199 (+) 1086 WP_328970555.1 RNA polymerase sigma factor Regulator
  OG764_RS24385 (OG764_24380) rcrQ 5547285..5549207 (-) 1923 WP_328970556.1 ABC transporter ATP-binding protein Regulator
  OG764_RS24390 (OG764_24385) rcrP 5549204..5550937 (-) 1734 WP_328970557.1 ABC transporter ATP-binding protein Regulator
  OG764_RS24395 (OG764_24390) - 5551153..5552592 (-) 1440 WP_328970558.1 FGGY family carbohydrate kinase -
  OG764_RS24400 (OG764_24395) - 5552751..5553050 (-) 300 WP_328970559.1 YtxH domain-containing protein -
  OG764_RS24420 (OG764_24415) - 5553794..5554951 (-) 1158 WP_328970560.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62277.47 Da        Isoelectric Point: 5.6096

>NTDB_id=653547 OG764_RS24390 WP_328970557.1 5549204..5550937(-) (rcrP) [Streptomyces sp. NBC_00239]
MLIRLLRTHLGPYRKPISLLVLLQLLQTSATLYLPTLNADIIDNGVVKGDTGYILGLGAVMLGVSVVQLVCNIGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGIAVGSIVIRTRPLFRLMQTRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFRDANTELTAVSLSAGRLMAL
MFPTVIVVVNMSSVAVVWFGAMRIDSGDMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTHSSVVP
PTDPVRELGERGALELRGADFRYPGAEAPVLKGIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGAVLVDGEDVR
RIEPGLLARTVGMVPQKPYLFSGTVATNLRYGRPDATDEELWRALEVAQAKEFVSALEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETQDATVVIVAQRVSTIRDADRIVVLDEGQVVGVGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653547 OG764_RS24390 WP_328970557.1 5549204..5550937(-) (rcrP) [Streptomyces sp. NBC_00239]
GTGCTCATCAGACTTCTGCGGACCCATCTGGGCCCGTACCGGAAACCCATCAGCCTGCTGGTCCTGCTCCAGCTCCTGCA
GACCAGCGCGACCCTCTACCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGCGACACCGGCTACA
TCCTGGGCCTGGGCGCCGTGATGCTCGGTGTCAGCGTGGTCCAGCTGGTGTGCAACATCGGCGCCGTCTACTTCGGCGCG
CGCACGGCCGCGGCGCTCGGCCGCGACGTGCGGGCCGCCGTGTTCGACCGGGTGCAGAGCTTCTCGGCGCGCGAGCTGGG
CCAGTTCGGGGCGCCGTCGCTGATCACCCGTACCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCATCGGCGGCATCGCGATGGCGCTGTCGCTCGATGTGAAGCTGTCGGGCGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCCGTCGGCAGCATCGTGATCCGCACCCGCCCGCTGTTCCGGCTGATGCA
GACGCGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTCCGCGACG
AGTACGAGAAGGACCGCTTCCGGGACGCGAACACCGAGCTGACGGCCGTCTCGCTGTCCGCCGGGCGGCTGATGGCCCTG
ATGTTCCCGACGGTCATCGTCGTGGTGAACATGTCCAGCGTGGCCGTGGTCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGACATGGAGATCGGCGCGCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGTGCCGAGCGGATCCAGGAGGTCCTGGACACCCACTCCAGCGTGGTCCCG
CCCACCGACCCGGTACGGGAGCTGGGCGAGCGCGGGGCGCTGGAGCTGCGGGGCGCGGACTTCCGCTACCCGGGCGCGGA
GGCGCCGGTGCTGAAGGGCATCGACCTGGTGGCCCGCCCGGGCGAGACCACCGCGGTGATCGGCTCCACGGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACGGGCGGCGCGGTGCTGGTCGACGGCGAGGACGTGCGG
CGGATCGAGCCCGGGCTGCTGGCCCGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGGCGGCCCGACGCGACCGACGAGGAGCTGTGGCGGGCCCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TGTCGGCGCTCGAAGGCGGTCTGGACGCGCCCGTCACCCAGGGCGGCACGAACGTCTCGGGCGGGCAGCGCCAGCGTCTG
GCGATCGCGCGGACGCTGGTGCAGCGTCCGGAGATCTACCTGTTCGACGACTCGTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCCCTGCGGGCGGCGCTCGCCCGCGAGACGCAGGACGCGACGGTCGTCATCGTGGCGCAGCGCGTGTCGACGATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCAGGTGGTGGGCGTCGGCCGGCATCACGAGCTGATGGCGGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.437

95.147

0.385