Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS17395 Genome accession   NZ_CP108095
Coordinates   3956089..3956778 (+) Length   229 a.a.
NCBI ID   WP_328969336.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3951089..3961778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS17375 (OG764_17370) - 3951980..3952411 (-) 432 WP_328969332.1 GNAT family N-acetyltransferase -
  OG764_RS17380 (OG764_17375) - 3952590..3953546 (+) 957 WP_328969333.1 alpha/beta hydrolase -
  OG764_RS17385 (OG764_17380) - 3953539..3954744 (+) 1206 WP_328969334.1 acyltransferase -
  OG764_RS17390 (OG764_17385) - 3954737..3956092 (+) 1356 WP_328969335.1 sensor histidine kinase -
  OG764_RS17395 (OG764_17390) vraR 3956089..3956778 (+) 690 WP_328969336.1 response regulator transcription factor Regulator
  OG764_RS17400 (OG764_17395) - 3956926..3958218 (+) 1293 WP_328973048.1 histidine kinase -
  OG764_RS17405 (OG764_17400) vraR 3958215..3958874 (+) 660 WP_328969337.1 response regulator transcription factor Regulator
  OG764_RS17410 (OG764_17405) - 3958902..3960119 (+) 1218 WP_328969338.1 cytochrome P450 -
  OG764_RS17415 (OG764_17410) - 3960131..3961012 (-) 882 WP_328973049.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24293.11 Da        Isoelectric Point: 4.6142

>NTDB_id=653529 OG764_RS17395 WP_328969336.1 3956089..3956778(+) (vraR) [Streptomyces sp. NBC_00239]
MSTPAPATAPIRVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGADAIAKVAELRPDVVLMDIRMPGVGGIEATATITA
EPGATVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRGPLKER
IGELTERETEVLALIAQGLSNAEIAGQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLIRPSGY

Nucleotide


Download         Length: 690 bp        

>NTDB_id=653529 OG764_RS17395 WP_328969336.1 3956089..3956778(+) (vraR) [Streptomyces sp. NBC_00239]
ATGAGCACCCCCGCCCCCGCCACCGCTCCCATCCGCGTGATGATCGCCGACGATCAGATGATGGTCCGCCAGGGCTTCAC
CGTGCTGCTCAACGCGCAGCCCGACATCGAGGTGGTCGGGCAGGCCGTGGACGGCGCCGACGCCATCGCCAAGGTCGCCG
AGCTGCGGCCCGACGTGGTGCTGATGGACATCCGCATGCCCGGCGTCGGCGGCATCGAGGCCACCGCCACCATCACCGCC
GAGCCCGGGGCCACCGTCAAGGTCCTGGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCGCTGCGCGCGGG
CGCGTCCGGGTTCCTCCTCAAGGACGCCTCCGCCGACCAGTTGGCGGAGGCTGTCCGGGTGGTCGCGGCCGGCGAGGCCC
TGCTCTCCCCGAACATCACCAAGCGCCTGATCACCGAGTTCTCCCGGATGGGGGCACCGCGGGGCCCGCTCAAGGAGCGG
ATCGGCGAGCTGACGGAACGGGAGACCGAGGTGCTGGCGCTGATCGCCCAGGGCCTGTCCAACGCCGAGATCGCCGGGCA
GCTGATCGTGGCCGAGCAGACGGTCAAGACCCACGTGGGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACCCAGG
CGGCGGTATTCGCGTACGAGACGGGGCTGATCCGCCCTTCGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(164-218)

Response regulator receiver domain (Response_reg)

(13-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.581

93.886

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

41.964

97.817

0.41