Detailed information NTG0653529

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: L6503_RS04530
• Genome accession: NZ_CP091770
• Coordinates: 962330..963385 (-)
• Length: 351 a.a.
• NCBI ID: WP_126131604.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain K115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 957330..968385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6503_RS04505 (L6503_04505)	-	957879..959291 (-)	1413	WP_237775352.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
L6503_RS04510 (L6503_04510)	comB10	959361..960491 (-)	1131	WP_237775353.1	DNA type IV secretion system protein ComB10	Machinery gene
L6503_RS04515 (L6503_04515)	comB9	960484..961449 (-)	966	WP_237775354.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
L6503_RS04520 (L6503_04520)	comB8	961449..962192 (-)	744	WP_237775355.1	type IV secretion system protein	Machinery gene
L6503_RS04525 (L6503_04525)	comB7	962189..962314 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
L6503_RS04530 (L6503_04530)	comB6	962330..963385 (-)	1056	WP_126131604.1	P-type conjugative transfer protein TrbL	Machinery gene
L6503_RS04535 (L6503_04535)	-	963393..964388 (-)	996	WP_121292642.1	PDZ domain-containing protein	-
L6503_RS04540 (L6503_04540)	-	964388..964681 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
L6503_RS04545 (L6503_04545)	panD	964692..965042 (-)	351	WP_154469994.1	aspartate 1-decarboxylase	-
L6503_RS04550 (L6503_04550)	-	965032..967254 (-)	2223	WP_237775356.1	AAA family ATPase	-
L6503_RS04555 (L6503_04555)	-	967254..967529 (-)	276	WP_180581874.1	ATP-dependent Clp protease adaptor ClpS	-
L6503_RS04560 (L6503_04560)	-	967549..967962 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39879.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=653529 L6503_RS04530 WP_126131604.1 962330..963385(-) (comB6) [Helicobacter pylori strain K115]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=653529 L6503_RS04530 WP_126131604.1 962330..963385(-) (comB6) [Helicobacter pylori strain K115]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAGAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966