Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   L6503_RS04975 Genome accession   NZ_CP091770
Coordinates   1049318..1049893 (-) Length   191 a.a.
NCBI ID   WP_237775399.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1044318..1054893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS04965 (L6503_04965) - 1046647..1047249 (-) 603 WP_237775397.1 restriction endonuclease subunit S -
  L6503_RS04970 (L6503_04970) - 1047246..1049285 (-) 2040 WP_237775398.1 class I SAM-dependent DNA methyltransferase -
  L6503_RS04975 (L6503_04975) comFC 1049318..1049893 (-) 576 WP_237775399.1 ComF family protein Machinery gene
  L6503_RS04980 (L6503_04980) tmk 1049881..1050456 (-) 576 WP_237775400.1 dTMP kinase -
  L6503_RS04985 (L6503_04985) coaD 1050458..1050931 (-) 474 WP_180424388.1 pantetheine-phosphate adenylyltransferase -
  L6503_RS04990 (L6503_04990) - 1050931..1051494 (-) 564 WP_187842014.1 UbiX family flavin prenyltransferase -
  L6503_RS04995 (L6503_04995) flgA 1051504..1052160 (-) 657 WP_237775401.1 flagellar basal body P-ring formation chaperone FlgA -
  L6503_RS05000 (L6503_05000) uvrD 1052157..1054205 (-) 2049 WP_237775402.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21389.91 Da        Isoelectric Point: 8.6744

>NTDB_id=653530 L6503_RS04975 WP_237775399.1 1049318..1049893(-) (comFC) [Helicobacter pylori strain K115]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANTVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=653530 L6503_RS04975 WP_237775399.1 1049318..1049893(-) (comFC) [Helicobacter pylori strain K115]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAGAATCCTGCAAGAACAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTGCTAATACTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963