Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG764_RS17335 Genome accession   NZ_CP108095
Coordinates   3942243..3942842 (-) Length   199 a.a.
NCBI ID   WP_328969325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3937243..3947842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS17315 (OG764_17310) - 3938188..3938877 (-) 690 WP_328969321.1 SigE family RNA polymerase sigma factor -
  OG764_RS17320 (OG764_17315) - 3939084..3940160 (-) 1077 WP_328969322.1 aspartate-semialdehyde dehydrogenase -
  OG764_RS17325 (OG764_17320) - 3940157..3941431 (-) 1275 WP_328969323.1 aspartate kinase -
  OG764_RS17330 (OG764_17325) - 3941594..3942250 (-) 657 WP_328969324.1 DUF5063 domain-containing protein -
  OG764_RS17335 (OG764_17330) recR 3942243..3942842 (-) 600 WP_328969325.1 recombination mediator RecR Machinery gene
  OG764_RS17340 (OG764_17335) - 3942897..3943241 (-) 345 WP_328969326.1 YbaB/EbfC family nucleoid-associated protein -
  OG764_RS17345 (OG764_17340) - 3943489..3944211 (+) 723 WP_328969327.1 SLATT domain-containing protein -
  OG764_RS17350 (OG764_17345) - 3944298..3944948 (-) 651 WP_328969328.1 hypothetical protein -
  OG764_RS17355 (OG764_17350) - 3945078..3947543 (-) 2466 WP_328973047.1 dolichyl-phosphate beta-glucosyltransferase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21785.10 Da        Isoelectric Point: 4.9918

>NTDB_id=653528 OG764_RS17335 WP_328969325.1 3942243..3942842(-) (recR) [Streptomyces sp. NBC_00239]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQDEQCTICRDPRRDPTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653528 OG764_RS17335 WP_328969325.1 3942243..3942842(-) (recR) [Streptomyces sp. NBC_00239]
TTGTATGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCCACCGACGTCCGCCGACTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTCTGCGGGAACGTGGCCCAGGACGAGCAGTGCACGATCTGCCGGGACCCGCGCCGCGACCCCACGGTG
ATCTGTGTGGTCGAGGAGCCCAAGGACGTGGTCGCGGTCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGAGGATCCGCGAGCTGCTCGCGCGCCTCGCCGACGGGG
CGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGGATGATCAAG
CCGATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTACTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.969

97.487

0.477