Detailed information NTG0653526

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: L6503_RS04515
• Genome accession: NZ_CP091770
• Coordinates: 960484..961449 (-)
• Length: 321 a.a.
• NCBI ID: WP_237775354.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain K115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 955484..966449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6503_RS04495 (L6503_04495)	-	955795..956727 (-)	933	WP_237775350.1	GDP-L-fucose synthase family protein	-
L6503_RS04500 (L6503_04500)	gmd	956720..957865 (-)	1146	WP_237775351.1	GDP-mannose 4,6-dehydratase	-
L6503_RS04505 (L6503_04505)	-	957879..959291 (-)	1413	WP_237775352.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
L6503_RS04510 (L6503_04510)	comB10	959361..960491 (-)	1131	WP_237775353.1	DNA type IV secretion system protein ComB10	Machinery gene
L6503_RS04515 (L6503_04515)	comB9	960484..961449 (-)	966	WP_237775354.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
L6503_RS04520 (L6503_04520)	comB8	961449..962192 (-)	744	WP_237775355.1	type IV secretion system protein	Machinery gene
L6503_RS04525 (L6503_04525)	comB7	962189..962314 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
L6503_RS04530 (L6503_04530)	comB6	962330..963385 (-)	1056	WP_126131604.1	P-type conjugative transfer protein TrbL	Machinery gene
L6503_RS04535 (L6503_04535)	-	963393..964388 (-)	996	WP_121292642.1	PDZ domain-containing protein	-
L6503_RS04540 (L6503_04540)	-	964388..964681 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
L6503_RS04545 (L6503_04545)	panD	964692..965042 (-)	351	WP_154469994.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36895.49 Da
• Isoelectric Point: 9.5634

>NTDB_id=653526 L6503_RS04515 WP_237775354.1 960484..961449(-) (comB9) [Helicobacter pylori strain K115]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKRGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=653526 L6503_RS04515 WP_237775354.1 960484..961449(-) (comB9) [Helicobacter pylori strain K115]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAAACCATAACCATTGGCGATAACACTAACGCCATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAACACAAGGATTGTGGGCGATTACATTATCG
CTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAGGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931