Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG259_RS28110 Genome accession   NZ_CP108088
Coordinates   6224625..6225578 (+) Length   317 a.a.
NCBI ID   WP_328947195.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6219625..6230578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS28095 (OG259_28105) - 6219756..6221105 (+) 1350 WP_328944784.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG259_RS28100 (OG259_28110) - 6221236..6222495 (+) 1260 WP_328944785.1 FAD-dependent oxidoreductase -
  OG259_RS28105 (OG259_28115) dnaG 6222525..6224417 (+) 1893 WP_328944786.1 DNA primase -
  OG259_RS28110 (OG259_28120) rpoS 6224625..6225578 (+) 954 WP_328947195.1 RNA polymerase sigma factor Regulator
  OG259_RS28115 (OG259_28125) - 6225575..6226831 (-) 1257 WP_328944787.1 TerD family protein -
  OG259_RS28120 (OG259_28130) rcrQ 6226866..6228818 (-) 1953 WP_328944788.1 ABC transporter ATP-binding protein Regulator
  OG259_RS28125 (OG259_28135) rcrP 6228818..6230551 (-) 1734 WP_328944789.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35860.07 Da        Isoelectric Point: 6.9000

>NTDB_id=653309 OG259_RS28110 WP_328947195.1 6224625..6225578(+) (rpoS) [Streptomyces sp. NBC_00250]
MVPPQRRRPDPGGSGPSSDLFRQYLREIGRIPLLTAEEEVELARRVEAGLFAEEKLANTPDLDSRLAGDLDRLVVLGRIA
KRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVH
VVELINRVIRVQRRMLQERGYEPTAEEVAAQLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESA
AFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 954 bp        

>NTDB_id=653309 OG259_RS28110 WP_328947195.1 6224625..6225578(+) (rpoS) [Streptomyces sp. NBC_00250]
GTGGTCCCGCCCCAGCGCCGGCGCCCCGATCCAGGCGGCAGCGGCCCCTCGTCCGACCTCTTCCGCCAGTACCTCCGCGA
GATCGGCCGCATCCCGCTGCTCACCGCCGAGGAGGAGGTCGAACTCGCCCGCCGCGTCGAGGCGGGTCTGTTCGCCGAGG
AGAAACTCGCCAACACCCCCGACCTGGACTCCCGGCTGGCGGGTGACCTGGACCGGCTCGTCGTCCTGGGACGGATCGCC
AAACGCAAGCTGATCGAGGCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAACGGTACGTGGGCCGCGGCCTGACCATGCT
GGACCTCGTCCAGGAGGGCAACCTCGGCCTCATCAGGGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCCA
CGTACGCCACCTGGTGGATCCGCCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTCCCCGTGCAC
GTCGTCGAACTCATCAACCGGGTCATCCGCGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAACCCACCGCCGAGGA
AGTCGCCGCCCAGCTGGACCTGGCCCCCGAGCGGGTCGGCGAGGTGCTCCGCCTCGCCCAGGAACCGGTCTCCCTGCACG
CCCCCGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCC
GCCTTCCTGCTGCTCCGCCGCCACCTGGAGGACGTCCTCTCCACCCTCGGCGAACGCGAACGCAAGGTCGTCCAGCTCCG
CTACGGTCTCGACGACGGCAGGCCCCGCACCCTGGAGGAGATAGGACGCCTCTTCGGCGTGACCCGCGAACGCATCCGCC
AGATCGAGTCCAAGACCCTCAGCAAACTCCGGGACCACGCGTACGCGGACCAACTGCGGGGGTATCTCGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(84-153)

Sigma-70, region 4 (Sigma70_r4)

(252-304)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(19-52)

Sigma-70 region 3 (Sigma70_r3)

(163-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.295

94.006

0.416