Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG259_RS28120 Genome accession   NZ_CP108088
Coordinates   6226866..6228818 (-) Length   650 a.a.
NCBI ID   WP_328944788.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6221866..6233818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS28105 (OG259_28115) dnaG 6222525..6224417 (+) 1893 WP_328944786.1 DNA primase -
  OG259_RS28110 (OG259_28120) rpoS 6224625..6225578 (+) 954 WP_328947195.1 RNA polymerase sigma factor Regulator
  OG259_RS28115 (OG259_28125) - 6225575..6226831 (-) 1257 WP_328944787.1 TerD family protein -
  OG259_RS28120 (OG259_28130) rcrQ 6226866..6228818 (-) 1953 WP_328944788.1 ABC transporter ATP-binding protein Regulator
  OG259_RS28125 (OG259_28135) rcrP 6228818..6230551 (-) 1734 WP_328944789.1 ABC transporter ATP-binding protein Regulator
  OG259_RS28130 (OG259_28140) - 6230682..6232121 (-) 1440 WP_328944790.1 FGGY family carbohydrate kinase -
  OG259_RS28135 (OG259_28145) - 6232152..6232463 (-) 312 WP_266891598.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 650 a.a.        Molecular weight: 69597.84 Da        Isoelectric Point: 5.0378

>NTDB_id=653310 OG259_RS28120 WP_328944788.1 6226866..6228818(-) (rcrQ) [Streptomyces sp. NBC_00250]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLKQLAPERGALWVMLIAGVLSVAASVVGPKILGKATDLVFAGVIGHQFEGGT
KAEAIERVRAGGDSGMADMLTGVDFTPGQGIDFSAVGDVLLVVLGVYVAAGLLMLVSTRMSIKVINRTVYRMREDVQTKL
ARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKR
SQPHFVQQWKSTGTLNAHVEEMYSGHNLVKVFGRQEESAKDFREQNEALYEAGFKAQFNSGVMQPVMFFVSNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPADELGASPADGWRTAD
LKGKVALEGVSFRYEADKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIATMSREQLRTG
IGMVLQDTWLFGGTIADNIAYGATRAVTRAEIEEAARAAHADRFVRTLPDGYDTVIDDDGAGVSAGEKQLITIARAFLSD
PVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLSSGGAYARLYAA
QFAQAVAEVD

Nucleotide


Download         Length: 1953 bp        

>NTDB_id=653310 OG259_RS28120 WP_328944788.1 6226866..6228818(-) (rcrQ) [Streptomyces sp. NBC_00250]
ATGGCCGGTCCTGGCGGACGCATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTGCTGAAGCAGCTGGCGCCCGAGCGCGGTGCGCTCTGGGTGATGCTGATCGCCGGTGTGCTGTCGGTGGCGGCCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACCGACCTCGTCTTCGCGGGCGTCATCGGGCACCAGTTCGAGGGCGGCACG
AAGGCGGAGGCGATCGAGCGGGTGCGGGCCGGGGGTGACTCCGGCATGGCGGACATGCTGACCGGGGTCGACTTCACTCC
GGGGCAGGGGATCGACTTCTCCGCCGTCGGCGACGTGCTGCTCGTGGTCCTCGGCGTGTACGTGGCGGCGGGCCTGCTGA
TGCTGGTCTCCACCCGGATGTCGATCAAGGTGATCAACCGGACGGTCTACCGGATGCGGGAGGACGTCCAGACCAAGCTG
GCGCGGCTCCCCCTGTCGTACTTCGACAAGGCCAAGCGCGGCGAGGTGCTGTCGCGGGCGACCAACGACATCGACAACAT
CTCGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTCGCGCTCGTGGCGCTGGTGACGGTGCCGGTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGCGC
TCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCCACGGGCACGCTCAACGCGCACGTGGAGGAGATGTACAGCGGGCACAA
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGAAGGACTTCCGCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGCGTGATGCAGCCGGTGATGTTCTTCGTCTCGAACATCAATTACGTCCTGGTGGCCGTG
GTCGGCGGTCTGCGGGTGGCGAGCGGCACGCTCTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TCGACGCCGAGGAGCAGGAGCCGGACGCACCGGCCGACGAGCTGGGGGCGTCCCCGGCCGACGGCTGGAGGACGGCCGAC
CTCAAGGGGAAGGTCGCCCTGGAGGGCGTCTCCTTCCGCTACGAGGCCGACAAGCCGCTCATCGAGGACCTGTCGCTCAC
GGTGGAGCCGGGCCAGACGGTCGCGATCGTCGGCCCGACGGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGT
TCTACGAGGTGACGGGCGGCCGGATCACCCTCGACGGGGTGGACATCGCCACGATGTCCCGGGAGCAGCTGCGGACCGGG
ATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGCGGCACCATCGCCGACAACATCGCGTACGGCGCCACGCGCGCGGT
GACCAGGGCGGAGATCGAGGAGGCGGCGCGGGCCGCCCACGCCGACCGGTTCGTCCGCACCCTGCCCGACGGCTACGACA
CGGTCATCGACGACGACGGGGCGGGGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGAC
CCGGTGATCCTCGTCCTCGACGAGGCCACCAGCTCGGTCGACACCCGTACCGAGGTCCTCATCCAGAAGGCGATGGCCCG
ACTGGCCCACGGGCGTACGTCGTTCGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGG
AGAACGGCTCGATCGTCGAACAGGGCACGCACGAGGAGCTGTTGTCGTCCGGCGGGGCCTACGCCCGTTTGTACGCGGCG
CAGTTCGCGCAGGCGGTCGCGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-350)

ABC transporter (ABC_tran)

(422-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.889

96.923

0.377