Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG259_RS28125 Genome accession   NZ_CP108088
Coordinates   6228818..6230551 (-) Length   577 a.a.
NCBI ID   WP_328944789.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6223818..6235551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS28110 (OG259_28120) rpoS 6224625..6225578 (+) 954 WP_328947195.1 RNA polymerase sigma factor Regulator
  OG259_RS28115 (OG259_28125) - 6225575..6226831 (-) 1257 WP_328944787.1 TerD family protein -
  OG259_RS28120 (OG259_28130) rcrQ 6226866..6228818 (-) 1953 WP_328944788.1 ABC transporter ATP-binding protein Regulator
  OG259_RS28125 (OG259_28135) rcrP 6228818..6230551 (-) 1734 WP_328944789.1 ABC transporter ATP-binding protein Regulator
  OG259_RS28130 (OG259_28140) - 6230682..6232121 (-) 1440 WP_328944790.1 FGGY family carbohydrate kinase -
  OG259_RS28135 (OG259_28145) - 6232152..6232463 (-) 312 WP_266891598.1 YtxH domain-containing protein -
  OG259_RS28155 (OG259_28165) - 6233473..6234804 (-) 1332 WP_328944791.1 chloride channel protein -
  OG259_RS28160 (OG259_28170) - 6234828..6235277 (-) 450 WP_328944792.1 amphi-Trp domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62729.88 Da        Isoelectric Point: 5.1646

>NTDB_id=653311 OG259_RS28125 WP_328944789.1 6228818..6230551(-) (rcrP) [Streptomyces sp. NBC_00250]
MLIRLLRTHLAPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVDGDTGYILRFGALMVGVSVVQVVCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLAISVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDEYEEERFRGANAELTDVSMATGRLMAL
MFPVVMTVVNISSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PVKPVTELDRRGHLEVRSADFRYPGAEESVLKDVALVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ELDPTLMAKTVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAADFVRNLEAGLNAPIAQGGTNVSGGQRQRI
AIARTLVQRPEIYLFDDSFSALDYETDALLRAALARETADSTVVIVAQRVSTIREADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=653311 OG259_RS28125 WP_328944789.1 6228818..6230551(-) (rcrP) [Streptomyces sp. NBC_00250]
GTGCTCATAAGACTTCTCCGAACCCACCTCGCGCCCTATCGAAAACCCATCGCACTGCTCGTGCTGCTGCAGTTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTCGACGGGGACACCGGATACA
TCCTGCGCTTCGGTGCCCTGATGGTCGGCGTCTCCGTCGTCCAGGTCGTCTGCAACATCGGGGCCGTGTTCTACGGCGCC
CGCACCGCGTCCGCGCTGGGCCGGGACGTGCGTGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGGGAGCTGGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTCTCCGCGCCCATCATGTGTGTCGGCGGCATCGTGATGGCCCTCGGCCAGGACGTGCCGCTCTCGGGCGTG
CTGCTCGCCGTGGTGCCGGTCCTCGCGATCTCGGTCTCCCTGATCGTCCGGAAGATGCGGCCGCTCTTCCGGACGATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTGAAGGACG
AGTACGAGGAGGAGCGGTTCCGCGGCGCCAACGCGGAGCTGACCGACGTGTCGATGGCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTCGTGAACATCTCCAGCGTGGCGGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCGGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGCGACCGAGTCCAGCGTGGTGCCG
CCGGTGAAGCCGGTGACCGAGCTCGACCGGCGGGGGCATCTGGAGGTCAGGAGCGCGGACTTCCGGTACCCGGGTGCGGA
GGAGTCGGTCCTCAAGGACGTGGCGCTGGTCGCCCGGCCCGGTGAGACGACCGCGATCATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTCGGCCTCGTGCCCCGGCTCTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGCGTCGACGTGCGC
GAGCTCGACCCGACGCTGATGGCGAAGACCGTGGGACTCGTGCCCCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTCCGGTACGGGAAGCCCGACGCGACCGATGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCGCCGACTTCG
TACGGAACCTCGAAGCCGGCCTGAACGCGCCCATCGCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGGATC
GCCATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGAGACGGA
CGCCCTGCTCCGGGCGGCACTCGCCCGGGAGACGGCCGACTCGACGGTCGTGATCGTCGCCCAGCGGGTCTCCACCATCC
GGGAGGCCGACCGGATCGTCGTCCTCGACGAGGGCCGTGTCGTCGGCACCGGACGGCACCAGGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTCCTCTCCCAGCTCACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.036

97.4

0.39