Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   OHT77_RS15205 Genome accession   NZ_CP108087
Coordinates   3555215..3555568 (-) Length   117 a.a.
NCBI ID   WP_328834245.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00252     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3550215..3560568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS15190 (OHT77_15175) - 3550475..3551752 (+) 1278 WP_328828942.1 EfeM/EfeO family lipoprotein -
  OHT77_RS15195 (OHT77_15180) efeB 3551749..3552966 (+) 1218 WP_328828943.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  OHT77_RS15200 (OHT77_15185) - 3553165..3555045 (+) 1881 WP_328828944.1 alkaline phosphatase family protein -
  OHT77_RS15205 (OHT77_15190) vicK 3555215..3555568 (-) 354 WP_328834245.1 ATP-binding protein Regulator
  OHT77_RS15210 (OHT77_15195) - 3555541..3555663 (-) 123 WP_328828945.1 hypothetical protein -
  OHT77_RS15215 (OHT77_15200) - 3555865..3556179 (+) 315 WP_328828947.1 MarR family transcriptional regulator -
  OHT77_RS15220 (OHT77_15205) - 3556176..3556973 (+) 798 WP_328828948.1 hypothetical protein -
  OHT77_RS15225 (OHT77_15210) - 3557248..3558041 (+) 794 WP_328834246.1 IS5 family transposase -
  OHT77_RS15230 (OHT77_15215) - 3558075..3558446 (+) 372 WP_328828950.1 BlaI/MecI/CopY family transcriptional regulator -
  OHT77_RS15235 (OHT77_15220) - 3559212..3559892 (-) 681 WP_328828952.1 hypothetical protein -
  OHT77_RS15240 (OHT77_15225) - 3559889..3560395 (-) 507 WP_328828953.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12131.56 Da        Isoelectric Point: 6.9782

>NTDB_id=653179 OHT77_RS15205 WP_328834245.1 3555215..3555568(-) (vicK) [Streptomyces sp. NBC_00252]
MHQALGNLLSNAARYCRPGDTVTASAEGDTVLVEVTDDGPGIPADELPHVFDRLWRGSAARNRSGGSGIGLAVVKELITA
HGGTVTALSESAAGTRIVIRLPRDGAARPSGDRLTHH

Nucleotide


Download         Length: 354 bp        

>NTDB_id=653179 OHT77_RS15205 WP_328834245.1 3555215..3555568(-) (vicK) [Streptomyces sp. NBC_00252]
ATCCACCAGGCCCTGGGCAACCTGCTGAGCAACGCGGCCCGCTACTGCCGCCCCGGCGACACCGTCACCGCATCCGCCGA
AGGCGACACGGTACTCGTGGAGGTCACCGACGACGGCCCCGGCATTCCCGCCGACGAACTCCCGCACGTCTTCGACCGGC
TCTGGCGCGGCAGCGCCGCCCGGAACCGCAGCGGCGGCAGCGGCATCGGCCTCGCCGTGGTGAAAGAACTGATCACCGCG
CACGGCGGCACCGTCACGGCCCTCTCGGAATCCGCCGCAGGGACACGGATCGTCATCCGGCTGCCGCGCGACGGCGCCGC
CCGGCCGTCCGGTGATAGGCTGACACACCATTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

41.905

89.744

0.376
  chiS Vibrio cholerae strain A1552

36.441

100

0.368
  micB Streptococcus pneumoniae Cp1015

39.091

94.017

0.368