Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS30040 Genome accession   NZ_CP108081
Coordinates   6730791..6731456 (+) Length   221 a.a.
NCBI ID   WP_143640191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6725791..6736456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS30020 (OG718_29995) - 6725879..6727078 (+) 1200 WP_143640187.1 acyltransferase -
  OG718_RS30025 (OG718_30000) - 6727314..6728645 (+) 1332 WP_260695412.1 sensor histidine kinase -
  OG718_RS30030 (OG718_30005) vraR 6728642..6729316 (+) 675 WP_143640189.1 response regulator transcription factor Regulator
  OG718_RS30035 (OG718_30010) - 6729448..6730794 (+) 1347 WP_260695385.1 histidine kinase -
  OG718_RS30040 (OG718_30015) vraR 6730791..6731456 (+) 666 WP_143640191.1 response regulator transcription factor Regulator
  OG718_RS30045 (OG718_30020) - 6731598..6732818 (+) 1221 WP_143640193.1 cytochrome P450 -
  OG718_RS30050 (OG718_30025) - 6732918..6734555 (-) 1638 WP_328845667.1 ABC transporter permease -
  OG718_RS30055 (OG718_30030) - 6734552..6735460 (-) 909 WP_328845668.1 ABC transporter ATP-binding protein -
  OG718_RS30060 (OG718_30035) - 6735565..6736062 (+) 498 WP_143640199.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23783.46 Da        Isoelectric Point: 4.6550

>NTDB_id=653017 OG718_RS30040 WP_143640191.1 6730791..6731456(+) (vraR) [Streptomyces sp. NBC_00258]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVDRVRELGPDVVLMDIRMPEMNGIEATREIVAASGASKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLAEEPRLSATAQASYGDLTE
RETEVLVLIAQGLSNAEIATRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=653017 OG718_RS30040 WP_143640191.1 6730791..6731456(+) (vraR) [Streptomyces sp. NBC_00258]
ATGACCATCCGCGTACTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTGCTGCTCGGCGCGATGCCGGA
CATCGAGGTCGTCGGAGAGGCGGTCAACGGCCGCGAGGCCGTGGACCGGGTCCGGGAGCTGGGGCCGGACGTGGTCCTGA
TGGACATCCGGATGCCCGAGATGAACGGCATCGAGGCGACCCGCGAGATCGTGGCGGCGAGCGGCGCGTCGAAGGTGCTC
GTCCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCCGGAGCGTCCGGCTTCCTCCTGAAGGACGC
CTCGGCCCGGCAGCTCGCGGACGGGGTGCGCGTGGTCGCGGCCGGCGAGGCACTGCTGGCGCCCTCGGTGACGAAGCGGC
TGATCACGGAGTTCTCGAAGCTGGCCGAGGAGCCCCGCCTGTCGGCCACCGCCCAGGCGTCCTACGGAGACCTGACCGAG
CGCGAGACGGAGGTCCTGGTCCTCATCGCCCAGGGCCTGTCCAACGCCGAGATAGCCACCCGCCTGGTCGTCGCCGAGTC
CACCATCAAGACCCACGTGAGCCGCATCCTCGTAAAACTGGGCCTGCGGGACCGCACCCAGGCAGCGGTGTTCGCCTACG
AGGCGCGACTGGTGACCCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.413

98.643

0.448
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

98.19

0.416