Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS30030 Genome accession   NZ_CP108081
Coordinates   6728642..6729316 (+) Length   224 a.a.
NCBI ID   WP_143640189.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6723642..6734316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS30015 (OG718_29990) - 6724744..6725886 (+) 1143 WP_328845666.1 alpha/beta hydrolase -
  OG718_RS30020 (OG718_29995) - 6725879..6727078 (+) 1200 WP_143640187.1 acyltransferase -
  OG718_RS30025 (OG718_30000) - 6727314..6728645 (+) 1332 WP_260695412.1 sensor histidine kinase -
  OG718_RS30030 (OG718_30005) vraR 6728642..6729316 (+) 675 WP_143640189.1 response regulator transcription factor Regulator
  OG718_RS30035 (OG718_30010) - 6729448..6730794 (+) 1347 WP_260695385.1 histidine kinase -
  OG718_RS30040 (OG718_30015) vraR 6730791..6731456 (+) 666 WP_143640191.1 response regulator transcription factor Regulator
  OG718_RS30045 (OG718_30020) - 6731598..6732818 (+) 1221 WP_143640193.1 cytochrome P450 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24340.06 Da        Isoelectric Point: 4.7259

>NTDB_id=653016 OG718_RS30030 WP_143640189.1 6728642..6729316(+) (vraR) [Streptomyces sp. NBC_00258]
MTSGSIRVLIADDQQMVRQGFTVLLNTQPDIDVVGQAVDGLDAIAKVAELAPDVVLMDIRMPELGGIEATRRITDRTPQI
RVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAIRVVAAGDALLAPGITRRLIAEFSRLDTTPRAPLKQRVGELT
ERETEVLALIAQGLSNAEIAERLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYECGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=653016 OG718_RS30030 WP_143640189.1 6728642..6729316(+) (vraR) [Streptomyces sp. NBC_00258]
ATGACGAGCGGCAGCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCAGGCAGGGCTTCACGGTGCTGCTCAACAC
CCAGCCCGACATCGACGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCCATCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGTATGCCCGAACTCGGCGGTATCGAGGCCACCCGCCGCATCACCGACAGGACTCCGCAGATC
AGAGTCCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGCGCCTCCGGCTTTCTGCT
GAAGGACGCGTCCGCCGACCAGCTCGCCGAGGCGATCCGGGTGGTGGCCGCCGGTGACGCGCTGCTCGCGCCCGGCATCA
CCCGGCGCCTCATCGCGGAGTTCTCCCGGCTGGACACCACGCCCCGTGCCCCGCTCAAGCAGCGCGTCGGCGAGCTGACC
GAGCGCGAGACGGAGGTGCTCGCCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCAGAGCGGCTCTTCGTCGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTCGTGAAGCTGGGCCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCGT
ACGAGTGCGGGCTGGTGCGCCCCAGTGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

96.429

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

41.518

100

0.415