Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS19640 Genome accession   NZ_CP108076
Coordinates   4384652..4385329 (-) Length   225 a.a.
NCBI ID   WP_328480678.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4379652..4390329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS19620 (OG860_19605) - 4380583..4380807 (+) 225 WP_328480674.1 hypothetical protein -
  OG860_RS19625 (OG860_19610) - 4380791..4382008 (-) 1218 WP_328480675.1 cytochrome P450 -
  OG860_RS19630 (OG860_19615) vraR 4382496..4383161 (-) 666 WP_328480676.1 response regulator transcription factor Regulator
  OG860_RS19635 (OG860_19620) - 4383158..4384528 (-) 1371 WP_328480677.1 histidine kinase -
  OG860_RS19640 (OG860_19625) vraR 4384652..4385329 (-) 678 WP_328480678.1 response regulator transcription factor Regulator
  OG860_RS19645 (OG860_19630) - 4385326..4386771 (-) 1446 WP_328480679.1 sensor histidine kinase -
  OG860_RS19650 (OG860_19635) - 4386782..4387981 (-) 1200 WP_328484570.1 acyltransferase -
  OG860_RS19655 (OG860_19640) - 4388238..4389332 (-) 1095 WP_328480680.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24374.10 Da        Isoelectric Point: 5.3141

>NTDB_id=652835 OG860_RS19640 WP_328480678.1 4384652..4385329(-) (vraR) [Streptomyces sp. NBC_00267]
MTTADTIRVLIADDQQMVRQGFTVLLNAHPGIEVIGQAVHGLDAVAKVAELDPDVVLMDIRMPELGGIDATHRITLTHPH
IKVLVLTTFDLDEYVYDALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPVITRKLIAEFSRLDGRPRAPLKERVGDL
TERETEVLTLIAQGLSNAEIADHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPAGY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=652835 OG860_RS19640 WP_328480678.1 4384652..4385329(-) (vraR) [Streptomyces sp. NBC_00267]
ATGACGACCGCCGACACCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCAGGCAGGGCTTCACCGTGCTGCTCAA
CGCCCATCCCGGCATCGAGGTGATCGGCCAGGCGGTGCACGGTCTGGACGCCGTCGCGAAGGTCGCCGAACTCGATCCGG
ACGTCGTCCTGATGGACATCCGCATGCCCGAGCTCGGCGGCATCGACGCCACGCACCGGATCACCCTCACACACCCCCAT
ATCAAGGTGCTGGTGCTCACCACCTTCGATCTCGACGAGTACGTGTACGACGCGCTGCGGGCCGGGGCGTCGGGGTTCCT
GCTCAAGGACGCGTCCGCGGACCAGCTCGCCGAGGCGGTCCGCGTGGTGGCGGCCGGCGACGCCCTGCTCGCCCCCGTCA
TCACCCGCAAGCTGATCGCCGAGTTCTCCCGCCTCGACGGCAGGCCCAGAGCCCCGCTGAAGGAGCGCGTCGGGGACCTC
ACCGAGCGCGAGACGGAGGTGCTCACCCTGATCGCGCAGGGGTTGTCCAACGCGGAGATCGCCGACCATCTCTTCGTCGC
CGAGCAGACCGTGAAGACACACGTGGGCCGCATCCTGGTGAAACTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCG
CCTACGAGTCGGGGCTGGTGAGACCCGCGGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.981

96

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

41.704

99.111

0.413