Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS19630 Genome accession   NZ_CP108076
Coordinates   4382496..4383161 (-) Length   221 a.a.
NCBI ID   WP_328480676.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4377496..4388161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS19615 (OG860_19600) - 4378974..4380494 (+) 1521 WP_328480673.1 APC family permease -
  OG860_RS19620 (OG860_19605) - 4380583..4380807 (+) 225 WP_328480674.1 hypothetical protein -
  OG860_RS19625 (OG860_19610) - 4380791..4382008 (-) 1218 WP_328480675.1 cytochrome P450 -
  OG860_RS19630 (OG860_19615) vraR 4382496..4383161 (-) 666 WP_328480676.1 response regulator transcription factor Regulator
  OG860_RS19635 (OG860_19620) - 4383158..4384528 (-) 1371 WP_328480677.1 histidine kinase -
  OG860_RS19640 (OG860_19625) vraR 4384652..4385329 (-) 678 WP_328480678.1 response regulator transcription factor Regulator
  OG860_RS19645 (OG860_19630) - 4385326..4386771 (-) 1446 WP_328480679.1 sensor histidine kinase -
  OG860_RS19650 (OG860_19635) - 4386782..4387981 (-) 1200 WP_328484570.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23876.62 Da        Isoelectric Point: 4.6426

>NTDB_id=652834 OG860_RS19630 WP_328480676.1 4382496..4383161(-) (vraR) [Streptomyces sp. NBC_00267]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELTPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLSDTPRLSLTAQAAYGDLTE
RETEVLVLIAQGLSNLEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652834 OG860_RS19630 WP_328480676.1 4382496..4383161(-) (vraR) [Streptomyces sp. NBC_00267]
ATGACGATTCGAGTGCTGATCGCCGACGACCAGATGATGGTGCGCGAGGGATTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGGGAGGCGGTCGACCGGGTCCGTGAACTGACGCCGGACGTGGTGCTCA
TGGACATCCGCATGCCCGAACTGAACGGCATCGAGGCGACGCGGGAGATCGTGGCGGCGGACGGCGCGGCGAAGGTCCTG
GTGCTGACGACGTTCGACCTGGACGAGTACGTCTACCAGGCACTGCGCGCGGGCGCCTCGGGCTTCCTGCTGAAGGACGC
GTCGGCACGCCAGCTGGCCGACGGGGTCCGGGTGGTGGCGGCGGGCGAGGCCCTGCTGGCCCCGTCCGTCACCAAGCGCC
TGATCACGGAGTTCTCGAAGCTGTCCGACACCCCGCGGCTGTCCCTGACGGCGCAGGCGGCCTACGGCGACCTGACCGAG
CGGGAGACGGAGGTACTCGTCCTGATCGCGCAGGGCCTGTCGAACCTGGAGATAGCCGGCCGGCTGGTGGTGGCCGAGTC
GACCATCAAGACCCACGTGAGCCGGATCCTGGTCAAGCTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCCTACG
AGGCGAGATTGGTGACACCGGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.037

98.643

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

98.19

0.407