Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG827_RS20865 Genome accession   NZ_CP108068
Coordinates   4434654..4435334 (-) Length   226 a.a.
NCBI ID   WP_327284559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4429654..4440334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS20840 (OG827_20840) - 4429756..4430952 (-) 1197 WP_328763289.1 cytochrome P450 -
  OG827_RS20845 (OG827_20845) - 4431087..4432253 (+) 1167 WP_328763290.1 delta-60 repeat domain-containing protein -
  OG827_RS20850 (OG827_20850) - 4432272..4432535 (+) 264 WP_327284556.1 hypothetical protein -
  OG827_RS20855 (OG827_20855) vraR 4432558..4433217 (-) 660 WP_327284557.1 response regulator transcription factor Regulator
  OG827_RS20860 (OG827_20860) - 4433214..4434566 (-) 1353 WP_328763291.1 histidine kinase -
  OG827_RS20865 (OG827_20865) vraR 4434654..4435334 (-) 681 WP_327284559.1 response regulator transcription factor Regulator
  OG827_RS20870 (OG827_20870) - 4435344..4436729 (-) 1386 WP_327284560.1 histidine kinase -
  OG827_RS20875 (OG827_20875) - 4436722..4437933 (-) 1212 WP_327284561.1 acyltransferase -
  OG827_RS20880 (OG827_20880) - 4437926..4438945 (-) 1020 WP_328763292.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24084.82 Da        Isoelectric Point: 4.6899

>NTDB_id=652568 OG827_RS20865 WP_327284559.1 4434654..4435334(-) (vraR) [Streptomyces sp. NBC_00272]
MSTPPDPIKVMIADDQMMVRQGFTVLLNAQPDIRVVGQAVDGADAVAKVAELGPDVVLMDIRMPGMGGIEATSIITATPD
STVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRAPSKARIDE
LTERETEVLSLIAQGLSNAEIAGHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLVRPTGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=652568 OG827_RS20865 WP_327284559.1 4434654..4435334(-) (vraR) [Streptomyces sp. NBC_00272]
ATGAGCACTCCGCCCGACCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGGCAGGGCTTCACCGTCCTCCT
CAATGCCCAGCCCGACATCCGGGTCGTCGGGCAGGCCGTGGACGGCGCCGACGCGGTGGCGAAGGTCGCCGAACTCGGCC
CGGACGTGGTGCTGATGGACATCCGCATGCCCGGGATGGGCGGCATCGAGGCCACCTCGATCATCACGGCAACCCCGGAC
TCCACCGTCAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCCTCCGG
GTTCCTACTGAAGGACGCGTCGGCCGACCAACTCGCCGAGGCGGTCCGGGTGGTGGCGGCCGGCGAGGCGCTGCTCTCAC
CGAACATCACGAAGCGGCTGATCACCGAGTTCTCCCGGATGGGGGCGCCGCGGGCGCCCTCCAAGGCGCGGATCGACGAG
CTGACCGAGCGGGAGACCGAGGTGCTGTCGCTGATCGCGCAGGGCCTGTCCAACGCGGAGATCGCCGGGCACCTGGTCGT
GGCCGAGCAGACCGTGAAGACCCATGTGGGGCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACCCAGGCCGCGGTGT
TCGCGTACGAGACGGGTCTGGTCCGTCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-123)

Bacterial regulatory proteins, luxR family (GerE)

(160-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

96.018

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

99.558

0.412