Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG827_RS20855 Genome accession   NZ_CP108068
Coordinates   4432558..4433217 (-) Length   219 a.a.
NCBI ID   WP_327284557.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4427558..4438217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS20835 (OG827_20835) - 4428799..4429751 (+) 953 Protein_4096 IS481 family transposase -
  OG827_RS20840 (OG827_20840) - 4429756..4430952 (-) 1197 WP_328763289.1 cytochrome P450 -
  OG827_RS20845 (OG827_20845) - 4431087..4432253 (+) 1167 WP_328763290.1 delta-60 repeat domain-containing protein -
  OG827_RS20850 (OG827_20850) - 4432272..4432535 (+) 264 WP_327284556.1 hypothetical protein -
  OG827_RS20855 (OG827_20855) vraR 4432558..4433217 (-) 660 WP_327284557.1 response regulator transcription factor Regulator
  OG827_RS20860 (OG827_20860) - 4433214..4434566 (-) 1353 WP_328763291.1 histidine kinase -
  OG827_RS20865 (OG827_20865) vraR 4434654..4435334 (-) 681 WP_327284559.1 response regulator transcription factor Regulator
  OG827_RS20870 (OG827_20870) - 4435344..4436729 (-) 1386 WP_327284560.1 histidine kinase -
  OG827_RS20875 (OG827_20875) - 4436722..4437933 (-) 1212 WP_327284561.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23584.42 Da        Isoelectric Point: 4.5518

>NTDB_id=652567 OG827_RS20855 WP_327284557.1 4432558..4433217(-) (vraR) [Streptomyces sp. NBC_00272]
MTIRVLIVDDQMMVREGFSVLLNAMDGIEVVGEAVDGREAIAQVAALRPDVVLMDIRMPVMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLILEFSKLSTPPKLADPAGVGELTERE
TEVLVLIAQGLSNAEIADRLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=652567 OG827_RS20855 WP_327284557.1 4432558..4433217(-) (vraR) [Streptomyces sp. NBC_00272]
ATGACGATCAGAGTGTTGATCGTCGACGACCAGATGATGGTCCGGGAGGGCTTCTCCGTCCTGTTGAACGCGATGGACGG
CATCGAGGTGGTCGGCGAGGCGGTGGACGGCCGGGAGGCCATCGCCCAGGTGGCGGCGCTACGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGGTGATGAACGGGCTGGAGGCCACGCGGGAGATCGTGGCCGCCGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGATCTCGACGAGTACGTGTACCAGGCCCTGCGGGCCGGGGCTTCCGGGTTCCTACTCAAGGACGC
CTCGGCCCGGCAGCTGGCCGACGGGGTACGGGTGGTGGCCTCGGGCGAGGCGCTGCTGGCGCCCACGGTCACCAAGCGGC
TGATCCTGGAGTTCTCGAAGCTCTCGACGCCTCCGAAGCTCGCGGACCCGGCGGGGGTCGGGGAGCTGACGGAGCGGGAG
ACGGAGGTGCTGGTGCTGATCGCGCAGGGCCTGTCCAACGCGGAGATAGCGGACCGGCTCATCGTCGCGGAGTCCACGAT
CAAGACGCACGTGAGCCGGATCCTGGTCAAGCTGGGCCTGCGCGACCGGACCCAGGCCGCGGTGTTCGCCTACGAGACCC
GCCTGGTGACCCCGGCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

98.63

0.447
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

100

0.425