Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BEST7003_RS11835 Genome accession   NZ_AP012496
Coordinates   2389468..2389764 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis BEST7003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2384468..2394764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS11790 (BEST7003_2320) tasA 2384876..2385661 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  BEST7003_RS11795 (BEST7003_2321) sipW 2385725..2386297 (-) 573 WP_003246088.1 signal peptidase I SipW -
  BEST7003_RS11800 (BEST7003_2322) tapA 2386281..2387042 (-) 762 Protein_2360 amyloid fiber anchoring/assembly protein TapA -
  BEST7003_RS11805 (BEST7003_2324) yqzG 2387314..2387640 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BEST7003_RS11810 (BEST7003_2325) spoIITA 2387682..2387861 (-) 180 WP_003230176.1 YqzE family protein -
  BEST7003_RS11815 (BEST7003_2326) comGG 2387932..2388306 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  BEST7003_RS11820 (BEST7003_2327) comGF 2388307..2388690 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  BEST7003_RS11825 (BEST7003_2328) comGE 2388716..2389063 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  BEST7003_RS11830 (BEST7003_2329) comGD 2389047..2389478 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  BEST7003_RS11835 (BEST7003_2330) comGC 2389468..2389764 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  BEST7003_RS11840 (BEST7003_2331) comGB 2389778..2390815 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  BEST7003_RS11845 (BEST7003_2332) comGA 2390802..2391872 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  BEST7003_RS11850 (BEST7003_2333) corA 2392284..2393237 (-) 954 WP_004399136.1 magnesium transporter CorA -
  BEST7003_RS11855 (BEST7003_2334) yqhB 2393380..2394708 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=65253 BEST7003_RS11835 WP_003230162.1 2389468..2389764(-) (comGC) [Bacillus subtilis BEST7003]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=65253 BEST7003_RS11835 WP_003230162.1 2389468..2389764(-) (comGC) [Bacillus subtilis BEST7003]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment