Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG386_RS28975 Genome accession   NZ_CP108067
Coordinates   6540396..6541433 (+) Length   345 a.a.
NCBI ID   WP_328793395.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6535396..6546433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS28955 (OG386_28970) - 6536045..6536449 (+) 405 WP_328790536.1 hypothetical protein -
  OG386_RS28960 (OG386_28975) - 6536496..6538598 (+) 2103 WP_328790537.1 molybdopterin oxidoreductase family protein -
  OG386_RS28965 (OG386_28980) - 6538564..6539559 (-) 996 WP_328793393.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG386_RS28970 (OG386_28985) - 6539625..6540227 (-) 603 WP_328790538.1 hypothetical protein -
  OG386_RS28975 (OG386_28990) rpoS 6540396..6541433 (+) 1038 WP_328793395.1 RNA polymerase sigma factor Regulator
  OG386_RS28980 (OG386_28995) - 6541517..6542032 (-) 516 WP_328790539.1 GNAT family N-acetyltransferase -
  OG386_RS28985 (OG386_29000) rcrQ 6542118..6544040 (-) 1923 WP_328790540.1 ABC transporter ATP-binding protein Regulator
  OG386_RS28990 (OG386_29005) rcrP 6544037..6545770 (-) 1734 WP_328790541.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38695.21 Da        Isoelectric Point: 5.2566

>NTDB_id=652499 OG386_RS28975 WP_328793395.1 6540396..6541433(+) (rpoS) [Streptomyces sp. NBC_00273]
MTVNVSESSEAKAVDEEPEVLELIEPVPVPRRRSSGDSGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFA
EEKLGNTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKF
STYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAAHLELTPERVLEVLRLAQEPVSL
HAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERI
RQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=652499 OG386_RS28975 WP_328793395.1 6540396..6541433(+) (rpoS) [Streptomyces sp. NBC_00273]
CTGACCGTGAACGTGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGAGCCCGAGGTACTGGAGCTGATCGAGCCGGT
GCCCGTGCCGCGCAGGCGCAGCAGTGGCGACAGCGGAGGCGGAGCGGGCCCGTCCGCGGACCTGTTCCGCCAGTACCTCC
GCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTCGCGCGCCGCGTCGAAGCCGGCCTGTTCGCC
GAGGAGAAACTCGGCAACACCCCCGACCTCGACTCCCAGCTCGCCCTCGACCTCGACAAGCTCGTCGTCATGGGGCGGAT
GGCCAAACGCCGGCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGACTCACCA
TGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTGATCCGCGCCGTCGAGAAGTTCGACTACGCCCGCGGGTACAAGTTC
TCCACCTACGCCACCTGGTGGATCCGCCAGGCGATGTCACGGGCCCTCGCCGACCAGGCCCGGACCATCCGGGTGCCCGT
CCACGTCGTCGAACTGATCAACCGGGTCGTCCGCGTACAGCGCCGGATGCTCCAGGAACGCGGGTACGAGCCCACGGCCG
AAGAGGTGGCCGCCCACCTGGAGTTGACCCCCGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGAACCGGTCTCCCTG
CACGCCCCGGTGGGCGAGGAGGACGACGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCCTCGCCCGTGGAATC
GGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTCCTGTCGACGCTCGGCGAGCGCGAGCGCAAGGTCGTCCAGC
TGCGGTACGGCCTCGCCGACGGGCGGCCCCGCACCCTGGAGGAGATCGGACGGATCTTCGGCGTGACGCGCGAGCGGATC
CGGCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(191-267)

Sigma-70 region 2 (Sigma70_r2)

(112-181)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70, region 4 (Sigma70_r4)

(280-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

84.928

0.374