Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG386_RS28990 Genome accession   NZ_CP108067
Coordinates   6544037..6545770 (-) Length   577 a.a.
NCBI ID   WP_328790541.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6539037..6550770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS28970 (OG386_28985) - 6539625..6540227 (-) 603 WP_328790538.1 hypothetical protein -
  OG386_RS28975 (OG386_28990) rpoS 6540396..6541433 (+) 1038 WP_328793395.1 RNA polymerase sigma factor Regulator
  OG386_RS28980 (OG386_28995) - 6541517..6542032 (-) 516 WP_328790539.1 GNAT family N-acetyltransferase -
  OG386_RS28985 (OG386_29000) rcrQ 6542118..6544040 (-) 1923 WP_328790540.1 ABC transporter ATP-binding protein Regulator
  OG386_RS28990 (OG386_29005) rcrP 6544037..6545770 (-) 1734 WP_328790541.1 ABC transporter ATP-binding protein Regulator
  OG386_RS28995 (OG386_29010) - 6545912..6547372 (-) 1461 WP_328790542.1 FGGY family carbohydrate kinase -
  OG386_RS29000 (OG386_29015) - 6547470..6547772 (-) 303 WP_030012123.1 hypothetical protein -
  OG386_RS29020 (OG386_29035) - 6548745..6548885 (+) 141 WP_328790543.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62546.57 Da        Isoelectric Point: 5.4346

>NTDB_id=652501 OG386_RS28990 WP_328790541.1 6544037..6545770(-) (rcrP) [Streptomyces sp. NBC_00273]
MLIRLLRTHLGTYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRTAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVFKTRPLFRQMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLSAGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTESSVVP
PKDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGKVLVDGEDVR
VLDPDLLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652501 OG386_RS28990 WP_328790541.1 6544037..6545770(-) (rcrP) [Streptomyces sp. NBC_00273]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTACGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACACTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCACTGATGCTCGGTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGTACGGCCGCGGCCTTCGGCCGGGACGTCCGCACCGCGGTCTTCGACCGCGTGCAGAGCTTCTCGGCACGGGAGCTGGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTCGCCGTCGTCCCGGTGCTCGGGATCTCGGTCGGCGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGCCAGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGTCCGCCGGCAAGCTCCTGGCCTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGGGGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCAAGGACCCGGTGCGCGAACTCGCCCGCCGCGGCCGCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTCATCGGCTCCACCGGAAGCGGCA
AGTCCACACTGCTGGGCCTGGTCCCGCGCCTGTTCGACGCGACCGGCGGCAAGGTCCTCGTCGACGGGGAGGACGTCCGC
GTGCTCGACCCGGACCTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACCATCGCCTC
CAACCTGCGCTACGGGCGACCGGACGCGAGCGACGAAGAGCTCTGGCAGGCGCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCCGCGCTGGAGGGTGGCCTGGAGGCCCCCGTCAGTCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAAGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGACAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.822

93.241

0.39