Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG386_RS28985 Genome accession   NZ_CP108067
Coordinates   6542118..6544040 (-) Length   640 a.a.
NCBI ID   WP_328790540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6537118..6549040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS28965 (OG386_28980) - 6538564..6539559 (-) 996 WP_328793393.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG386_RS28970 (OG386_28985) - 6539625..6540227 (-) 603 WP_328790538.1 hypothetical protein -
  OG386_RS28975 (OG386_28990) rpoS 6540396..6541433 (+) 1038 WP_328793395.1 RNA polymerase sigma factor Regulator
  OG386_RS28980 (OG386_28995) - 6541517..6542032 (-) 516 WP_328790539.1 GNAT family N-acetyltransferase -
  OG386_RS28985 (OG386_29000) rcrQ 6542118..6544040 (-) 1923 WP_328790540.1 ABC transporter ATP-binding protein Regulator
  OG386_RS28990 (OG386_29005) rcrP 6544037..6545770 (-) 1734 WP_328790541.1 ABC transporter ATP-binding protein Regulator
  OG386_RS28995 (OG386_29010) - 6545912..6547372 (-) 1461 WP_328790542.1 FGGY family carbohydrate kinase -
  OG386_RS29000 (OG386_29015) - 6547470..6547772 (-) 303 WP_030012123.1 hypothetical protein -
  OG386_RS29020 (OG386_29035) - 6548745..6548885 (+) 141 WP_328790543.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68965.53 Da        Isoelectric Point: 5.3025

>NTDB_id=652500 OG386_RS28985 WP_328790540.1 6542118..6544040(-) (rcrQ) [Streptomyces sp. NBC_00273]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGATK
QQALEGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKIGKKS
QPQFVAQWKATGALNAHIEEMYSGHSLVKVFGRQRESAAVFAEQNEALYRSSFKSQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEPDAVVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRDGIGMVLQDTWL
FGGTIAQNIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLARGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=652500 OG386_RS28985 WP_328790540.1 6542118..6544040(-) (rcrQ) [Streptomyces sp. NBC_00273]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGTTCGGGCAAGCGGCTGCT
GCGCCAGCTCGCGTACGACCGGGCCAAGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTGGTGG
GTCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGGAGATGCCGGCCGGGGCCACCAAG
CAGCAGGCGTTGGAGGGGCTGCGCGCCCGGGGCCAGGACGGCATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTCGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATAGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCTTCGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGGCGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGCCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAGGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGTCCTCCTTCA
AGTCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCCGGAGCAGGAGCCGGACGCGGTGGTGCCGGAGCGTCCGGAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTCACGGTCGAGCCGGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGTTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGACGGCATCGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGCAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCTCG
GGCCGCCCACGCGGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGAGCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCGCGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGATCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCCTCGGGCGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.193

97.188

0.391